Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq310 174 8e-39 >seq310 Length=366558 Score = 174 bits (192), Expect = 8e-39 Identities = 186/246 (76%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 25914 CATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTC 25973 ||||||| |||||| | | |||||| |||||||| ||||| | |||||||| ||||||| Sbjct 101737 CATTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAAAACAAATCTC 101796 Query 25974 TCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTG 26033 | |||||||| ||||||||||| ||| ||||| | || ||| || ||||| || |||| Sbjct 101797 TTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAAAAATTCAAATATGTCTG 101856 Query 26034 AGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTA 26093 ||||||||||| | ||||||||||||| ||| ||| || || |||||||||| Sbjct 101857 CATGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCTCCTTGATCTA 101916 Query 26094 CGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGT 26153 | ||||| || | ||| ||||| | ||| |||||||| || | ||| |||| Sbjct 101917 CATATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTCGAAGTGCCGT 101976 Query 26154 TTGTGC 26159 | |||| Sbjct 101977 TGGTGC 101982 Score = 102 bits (112), Expect = 4e-17 Identities = 314/477 (66%), Gaps = 14/477 (3%) Strand=Plus/Plus Query 24686 GCTGGTTTAGTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAA 24745 || ||||| ||||| | ||||||||| ||||||||||| ||||||||| || |||||| Sbjct 100539 GCAGGTTTTGTTCTTAAATAATACATACCAGTTTTCAAGCCCTTCTTCCATCCATAAAAA 100598 Query 24746 TGCATTGATGTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCT 24805 || || || | | | | | ||||| ||| | | | || | || || ||| Sbjct 100599 TGAATGGACGACATTACTTGATAGTTTGGCTTTTCAATATGAATATTTAAAGACTG-GCT 100657 Query 24806 -TGGCAAACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATC 24864 ||| || ||| | | |||||| || | || | || |||| || || || Sbjct 100658 CTGGTCAATAAAGGCTCCACGATCTGCCGCCATGTTTAAAATTACTTTCTGTGAAATTTC 100717 Query 24865 GTAAGCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGA 24924 | | ||||| ||| ||| ||| || ||| ||||| | || ||||||||||| ||| Sbjct 100718 CCACACAGTTTTATATATCTTTTTCATATCATCGGGAATTCCTGGAATATTTTGAATTGA 100777 Query 24925 TCCATTTTCTCTCAATA----GATTCAATCTCATATTCGGTGTCCAAAGAT--TAATTTT 24978 ||| | | ||| | | || | |||| || ||| | | ||| | Sbjct 100778 GCCACAAT-TGGCAAGAACCTGGTT---TTTCATCA-CGTCATCCCACAGTCCTAACTCA 100832 Query 24979 TTCAAGATCTCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCT 25038 |||| |||||||| ||| || | || | | | |||||||||||| ||||| | ||| Sbjct 100833 GTCAA-ATCTCTAAGCAAATGATGGTTGACAACGAAAAATTCTCCAGATAAAACGCGTCT 100891 Query 25039 TATTGATAAGTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGT 25098 | | ||| || |||||| ||||||| | | |||||||||| || || ||||| | || Sbjct 100892 TGTATATAGATTCGAAGTGTATGGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGT 100951 Query 25099 AGATGCTGTTGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAAT 25155 || || || |||||| || | | || |||||||| | ||| || ||| |||| Sbjct 100952 TGAAGCGGTAGGCATTGGGGCAAGAAGTAATGAATTTCTAATACCGTACTTAGCAAT 101008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253027701307100