Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12 233 3e-56 seq218 143 4e-29 seq428 114 2e-20 >seq12 Length=2314596 Score = 233 bits (258), Expect = 3e-56 Identities = 584/881 (66%), Gaps = 18/881 (2%) Strand=Plus/Minus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| ||||| || ||||| || || |||||||||||||| || || || ||| Sbjct 282087 TTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTGGAAATTTTG 282028 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 |||||||| ||||| ||||| | |||||| || || || || ||| Sbjct 282027 TTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAACTCTACTAAA 281968 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043 | | || ||||||||||||| ||| || ||||||| | |||||||||||| | ||| Sbjct 281967 AGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATACCAATTAGG 281908 Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103 || | ||| | ||||||| | | |||||| | || || | ||| | || ||||| Sbjct 281907 CTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCGCGAATTATA 281848 Query 18104 TTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCA 18163 | | |||| | ||||| ||| | || || || | || | | |||||| ||| Sbjct 281847 TCTGTTACTCGCTCTTTTGATGGTTTTTGAACAAT---ATAAGAAAACATTAAACAAGCA 281791 Query 18164 AAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGC 18223 |||||| || ||||||||||| | || || | || ||| ||| || | || ||| Sbjct 281790 AAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAGTCCTGGC 281731 Query 18224 ATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCC 18283 || | ||| | ||| || |||||||| || | || ||||| | |||||||| || || Sbjct 281730 ATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAAAATTCCT 281671 Query 18284 TCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATT--TATTGCTCAGTATC 18340 || || || || || | | || ||| | || | | ||| || |||| | || Sbjct 281670 TCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTGCTGA---TC 281614 Query 18341 CATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT--AA 18398 || | | ||||| || | | | ||| || || | || |||||||| || Sbjct 281613 CAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATTGAAA 281554 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458 | |||| ||||| |||| | || |||||||||||| || | | |||||||| Sbjct 281553 AGAAAT--TCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACATTT 281496 Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518 | ||||| || |||| || || || || |||| |||||| | | |||||| | || Sbjct 281495 CTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTTACTT 281436 Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578 | | || | ||||| ||||| | || ||||| || || || |||| | || | Sbjct 281435 GTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCAGCAA 281376 Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA--TTGTTCCATTC 18636 |||| || | |||| | ||||||||| |||||| || |||| | || | ||| | Sbjct 281375 AAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCAT--TTGACAACTTATCCCAGTG 281318 Query 18637 ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTT 18696 | | || || || || || |||||||| | |||||| || || | ||| || | || Sbjct 281317 GGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCCTT 281258 Query 18697 GTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATA 18737 |||| ||| |||| ||| || ||| |||||||||| || Sbjct 281257 GTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTA 281217 >seq218 Length=661058 Score = 143 bits (158), Expect = 4e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| || ||||||||||| || ||| | ||||| ||| || Sbjct 352380 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 352321 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||||||| ||| || || || |||||||| || |||||||| || Sbjct 352320 GACACAATTGAAAACGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAG 352261 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||||||||| || | |||||| |||||||| || ||||| || Sbjct 352260 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 352201 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| || || ||||| || ||| | | ||||| || Sbjct 352200 ATTCAGAAAGAGAGTACCCTCCATTTGGTTTTACGTCTTAGAGGTGG 352154 Score = 129 bits (142), Expect = 9e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| ||| | ||||| ||||| || || | || || ||| || Sbjct 356909 AATGCAGATTTTTGTTAAGACACTAACTGGTAAAACAATCACCCTTGAGGTAGAACCGTC 356850 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | || ||||| || |||||| ||||||||||| || || || ||||| || Sbjct 356849 TGACACAATAGAGAACGTAAAGGCTAAAATTCAAGATAAAGAGGGTATTCCACCAGACCA 356790 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||| |||| ||| || |||||||| |||||| || || || || ||||| || Sbjct 356789 ACAAAGATTAATTTTTGCTGGCAAGCAGCTTGAAGATGGTAGGACATTGTCTGATTACAA 356730 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || ||||||||||| || | | ||||| ||| Sbjct 356729 CATCCAGAAAGAATCCACCCTTCATTTAGTTTTGCGTCTTAGAGGAGGT 356681 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| ||||| |||||||| || | ||||| || ||| Sbjct 356224 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATAACCCTTGAAGTAGAGCCATCT 356165 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||| ||| ||||| ||||| || ||||| || || ||||| ||| Sbjct 356164 GATACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAA 356105 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| |||||| || ||| | |||||| |||| | |||||||||||| Sbjct 356104 CAACGTCTTATTTTTGCCGGGAAACAGTTGGAAGATGGACGAACCCTTTCAGATTATAAT 356045 Query 156003 AT 156004 || Sbjct 356044 AT 356043 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||| ||||| || || |||||||| ||| || Sbjct 356680 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCA 356621 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| ||||| ||||| ||||||||||| || ||||| || Sbjct 356620 GATACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 356561 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || || || | ||| || || || || |||||| | || | || ||||||||| Sbjct 356560 CAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAAT 356501 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || || ||||| || | ||||| ||||| || Sbjct 356500 ATTCAAAAAGAATCCACTCTCCATTTGGTACTCAGATTGAGAGGAGG 356454 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| || ||||||||||| || ||| | ||||| ||| || Sbjct 357233 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 357174 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || ||| || || || |||||||| || |||||||| ||| Sbjct 357173 GACACAATTGAAAACGTTAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAA 357114 Query 155943 CAA 155945 ||| Sbjct 357113 CAA 357111 Score = 86.0 bits (94), Expect = 9e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| ||| | ||||||||||| || ||| | ||||| ||| || Sbjct 352153 AATGCAGATTTTTGTTAAGACACTAACTGGAAAAACCATCACACTGGAAGTAGAACCGTC 352094 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| ||| ||||| || || || || |||||||| || |||||||| || Sbjct 352093 AGACACAATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCA 352034 Query 155942 ACAAAGATTGAT 155953 |||| | ||||| Sbjct 352033 ACAACGTTTGAT 352022 >seq428 Length=160056 Score = 114 bits (126), Expect = 2e-20 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || || || || || || || || || ||||| |||||| || Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| ||||| ||||| |||||||||||||| || || || || ||| Sbjct 129504 GATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAA 129563 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| ||| || || || | |||||| | | ||||| || ||||| | Sbjct 129564 CAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACA-- 129621 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | ||||||| || |||| | ||||| || |||||||| || || |||| Sbjct 129622 ACATCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGGTG 129672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731835516180800