Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq12 233 3e-56
seq218 143 4e-29
seq428 114 2e-20
>seq12
Length=2314596
Score = 233 bits (258), Expect = 3e-56
Identities = 584/881 (66%), Gaps = 18/881 (2%)
Strand=Plus/Minus
Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923
||||| ||||| || ||||| || || |||||||||||||| || || || |||
Sbjct 282087 TTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTGGAAATTTTG 282028
Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983
|||||||| ||||| ||||| | |||||| || || || || |||
Sbjct 282027 TTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAACTCTACTAAA 281968
Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043
| | || ||||||||||||| ||| || ||||||| | |||||||||||| | |||
Sbjct 281967 AGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATACCAATTAGG 281908
Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103
|| | ||| | ||||||| | | |||||| | || || | ||| | || |||||
Sbjct 281907 CTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCGCGAATTATA 281848
Query 18104 TTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCA 18163
| | |||| | ||||| ||| | || || || | || | | |||||| |||
Sbjct 281847 TCTGTTACTCGCTCTTTTGATGGTTTTTGAACAAT---ATAAGAAAACATTAAACAAGCA 281791
Query 18164 AAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGC 18223
|||||| || ||||||||||| | || || | || ||| ||| || | || |||
Sbjct 281790 AAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAGTCCTGGC 281731
Query 18224 ATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCC 18283
|| | ||| | ||| || |||||||| || | || ||||| | |||||||| || ||
Sbjct 281730 ATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAAAATTCCT 281671
Query 18284 TCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTATT--TATTGCTCAGTATC 18340
|| || || || || | | || ||| | || | | ||| || |||| | ||
Sbjct 281670 TCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTGCTGA---TC 281614
Query 18341 CATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT--AA 18398
|| | | ||||| || | | | ||| || || | || |||||||| ||
Sbjct 281613 CAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATTGAAA 281554
Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTT 18458
| |||| ||||| |||| | || |||||||||||| || | | ||||||||
Sbjct 281553 AGAAAT--TCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACATTT 281496
Query 18459 CAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATT 18518
| ||||| || |||| || || || || |||| |||||| | | |||||| | ||
Sbjct 281495 CTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGTTACTT 281436
Query 18519 GAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGA 18578
| | || | ||||| ||||| | || ||||| || || || |||| | || |
Sbjct 281435 GTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCAGCAA 281376
Query 18579 AAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGA--TTGTTCCATTC 18636
|||| || | |||| | ||||||||| |||||| || |||| | || | ||| |
Sbjct 281375 AAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCAT--TTGACAACTTATCCCAGTG 281318
Query 18637 ATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTT 18696
| | || || || || || |||||||| | |||||| || || | ||| || | ||
Sbjct 281317 GGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCCTT 281258
Query 18697 GTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATA 18737
|||| ||| |||| ||| || ||| |||||||||| ||
Sbjct 281257 GTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTA 281217
>seq218
Length=661058
Score = 143 bits (158), Expect = 4e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| ||||||| || ||||||||||| || ||| | ||||| ||| ||
Sbjct 352380 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 352321
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| ||||||||| ||| || || || |||||||| || |||||||| ||
Sbjct 352320 GACACAATTGAAAACGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAG 352261
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | ||||||| ||||||||| || | |||||| |||||||| || ||||| ||
Sbjct 352260 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 352201
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| |||||| || || ||||| || ||| | | ||||| ||
Sbjct 352200 ATTCAGAAAGAGAGTACCCTCCATTTGGTTTTACGTCTTAGAGGTGG 352154
Score = 129 bits (142), Expect = 9e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| |||| ||| | ||||| ||||| || || | || || ||| ||
Sbjct 356909 AATGCAGATTTTTGTTAAGACACTAACTGGTAAAACAATCACCCTTGAGGTAGAACCGTC 356850
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | || ||||| || |||||| ||||||||||| || || || ||||| ||
Sbjct 356849 TGACACAATAGAGAACGTAAAGGCTAAAATTCAAGATAAAGAGGGTATTCCACCAGACCA 356790
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
||||||||| |||| ||| || |||||||| |||||| || || || || ||||| ||
Sbjct 356789 ACAAAGATTAATTTTTGCTGGCAAGCAGCTTGAAGATGGTAGGACATTGTCTGATTACAA 356730
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050
|| ||||| | || ||||||||||| || | | ||||| |||
Sbjct 356729 CATCCAGAAAGAATCCACCCTTCATTTAGTTTTGCGTCTTAGAGGAGGT 356681
Score = 116 bits (128), Expect = 5e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | |||||||| ||||| |||||||| || | ||||| || |||
Sbjct 356224 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATAACCCTTGAAGTAGAGCCATCT 356165
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || |||||| ||| ||||| ||||| || ||||| || || ||||| |||
Sbjct 356164 GATACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAA 356105
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | | |||| |||||| || ||| | |||||| |||| | ||||||||||||
Sbjct 356104 CAACGTCTTATTTTTGCCGGGAAACAGTTGGAAGATGGACGAACCCTTTCAGATTATAAT 356045
Query 156003 AT 156004
||
Sbjct 356044 AT 356043
Score = 107 bits (118), Expect = 3e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| || | || || | ||||| ||||| || || |||||||| ||| ||
Sbjct 356680 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCA 356621
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || || ||| ||||| ||||| ||||||||||| || ||||| ||
Sbjct 356620 GATACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 356561
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || || || | ||| || || || || |||||| | || | || |||||||||
Sbjct 356560 CAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAAT 356501
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049
|| ||||| | || || ||||| || | ||||| ||||| ||
Sbjct 356500 ATTCAAAAAGAATCCACTCTCCATTTGGTACTCAGATTGAGAGGAGG 356454
Score = 91.5 bits (100), Expect = 2e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
|||||||| ||| ||||||| || ||||||||||| || ||| | ||||| ||| ||
Sbjct 357233 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 357174
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||| || ||| || || || |||||||| || |||||||| |||
Sbjct 357173 GACACAATTGAAAACGTTAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAA 357114
Query 155943 CAA 155945
|||
Sbjct 357113 CAA 357111
Score = 86.0 bits (94), Expect = 9e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
|||||| || ||| |||| ||| | ||||||||||| || ||| | ||||| ||| ||
Sbjct 352153 AATGCAGATTTTTGTTAAGACACTAACTGGAAAAACCATCACACTGGAAGTAGAACCGTC 352094
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
|| | ||| ||| ||||| || || || || |||||||| || |||||||| ||
Sbjct 352093 AGACACAATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCA 352034
Query 155942 ACAAAGATTGAT 155953
|||| | |||||
Sbjct 352033 ACAACGTTTGAT 352022
>seq428
Length=160056
Score = 114 bits (126), Expect = 2e-20
Identities = 165/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||||||||| | || || || || || || || || || ||||| |||||| ||
Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || ||| ||||| ||||| |||||||||||||| || || || || |||
Sbjct 129504 GATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAA 129563
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
||| | | |||| ||| || || || | |||||| | | ||||| || ||||| |
Sbjct 129564 CAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACA-- 129621
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051
| ||||||| || |||| | ||||| || |||||||| || || ||||
Sbjct 129622 ACATCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGGTG 129672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731835516180800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |