Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq218 174 3e-38 seq12 170 4e-37 seq428 145 2e-29 seq25 141 2e-28 >seq218 Length=661058 Score = 174 bits (192), Expect = 3e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||||||||| || |||||||| | || | ||||| ||| || |||||| Sbjct 356679 ATACCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCA 356738 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| | |||| || | || || |||||||| |||||||| ||||| || ||| Sbjct 356739 GACAATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGT 356798 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||||||||| |||||| ||||| || ||| | || |||| |||| Sbjct 356799 GGAATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCT 356858 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || ||||||||||||| ||| |||| ||| ||||||||| Sbjct 356859 ACCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCATT 356909 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||| | ||||| |||||||| |||| || || ||||||||||| Sbjct 355995 ATACCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCT 356054 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||||| |||| ||||| ||||| || ||||| || | | |||||||| ||| Sbjct 356055 GAAAGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGT 356114 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| ||| || || ||| | ||| || | ||| Sbjct 356115 GGGATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCT 356174 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || || |||||||||||||||||||| | || || ||||| Sbjct 356175 ACTTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||||||||| || ||||| | ||| |||||| || || |||||| Sbjct 352151 ATTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCA 352210 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| |||| |||||||||||||| ||||| || || | || || || || Sbjct 352211 GACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGA 352270 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || ||| || || || || | ||||| | |||| Sbjct 352271 GGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCT 352330 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||||||| |||||||| ||||||| ||| || ||||| Sbjct 352331 ACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 145 bits (160), Expect = 2e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||||||| || ||||| | ||| |||||| || || |||||| Sbjct 357232 ATACCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCA 357291 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||||| |||| |||||||| ||||||||||| || || | ||||| || || Sbjct 357292 GACAATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGA 357351 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| || || || || || ||||| || | ||||||| |||| Sbjct 357352 GGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCT 357411 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 ||||| || || || ||||||||||||| ||| |||| || Sbjct 357412 ACTTCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAACAA 357451 Score = 140 bits (154), Expect = 6e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 192327 TACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATC 192386 ||| ||||| | ||| | ||||| ||||||||||| || | || || |||| || Sbjct 356471 TACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACCATCTTC 356530 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 || |||||| || ||||||||||| ||||| ||||| ||||| || |||||||| ||||| Sbjct 356531 CAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTG 356590 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 ||||| ||| ||||| || | |||||| | ||| ||||||| ||| || ||||| Sbjct 356591 AATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGATCGTTTT 356650 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||| | || || | || || ||||| Sbjct 356651 ACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| ||||| || |||||||| | ||| | ||||| ||||| || ||| Sbjct 356223 ATACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCA 356282 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| || || || || |||||||| |||| | ||||| || || Sbjct 356283 GAAAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGA 356342 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| ||| || || || | ||| || | || Sbjct 356343 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCA 356402 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||||||| ||||| || ||||| | || || | ||| ||||||||| Sbjct 356403 ACTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453 >seq12 Length=2314596 Score = 170 bits (188), Expect = 4e-37 Identities = 529/818 (65%), Gaps = 9/818 (1%) Strand=Plus/Minus Query 49590 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 49649 |||||||| ||||| ||||| || ||||||| || || | ||| | ||| Sbjct 282027 TTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAACTCTACTAAA 281968 Query 49650 AATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAAT 49709 | | || ||||||||||| | ||| || ||||| | || ||||||||||| | || Sbjct 281967 AGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATACCAATTAGG 281908 Query 49710 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 49769 | | || || |||||| | |||||| | ||| |||| || || | |||||| Sbjct 281907 CTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCGCGAATTATA 281848 Query 49770 ataattatattattttttgataatttatatttaatatgattcgcatatattaaACATGCA 49829 ||| | ||||||| ||| || || | || | | | |||||||| ||| Sbjct 281847 TCTGTTACTCGCTCTTTTGATGGTTT---TTGAACAATATAAGAAAACATTAAACAAGCA 281791 Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889 |||||| ||| ||||| || || | ||| |||| |||||| ||| || | ||||||| Sbjct 281790 AAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAGTCCTGGC 281731 Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949 || | || | || || |||||||| || | |||||||| | |||||||| || || Sbjct 281730 ATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAAAATTCCT 281671 Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAT-ATCCA 50008 || ||| |||||||| | | || | || || || || | | || | ||||| Sbjct 281670 TCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTA-CTGCTGATCCA 281612 Query 50009 ATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAA 50068 || | ||||||||| || || || || | | |||| || |||| ||||| || || || Sbjct 281611 ATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATTGAA-AA 281553 Query 50069 TTCAtt-tttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCAG 50127 ||| ||| || | || | | ||||||||| | Sbjct 281552 GAAATTCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACATTTCTG 281493 Query 50128 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATAC-TGA 50186 |||| | | ||| || || ||||| || |||||| | || || | ||| || Sbjct 281492 AATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAG-TTACTTGT 281434 Query 50187 ACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAG 50246 ||||| | ||||| || || | || ||| |||||| ||||||||||| || || Sbjct 281433 ACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCAGCAAAA 281374 Query 50247 AATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCA 50306 || || | || | | ||| ||||| |||||| || | || || ||||| || Sbjct 281373 AAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAGTGGGCA 281314 Query 50307 AGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTTATAC 50366 || || || || | |||||||||||| ||||||| || || ||| | | || || ||| Sbjct 281313 AGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCCTTGTAC 281254 Query 50367 ATTTGATATATATCAAAATGTTCAATGGGAAATAGTAC 50404 ||| | || || || || ||| ||||||| ||| Sbjct 281253 TTTTCCCAAATGTCTGGATATTGAATAGGAAATATTAC 281216 >seq428 Length=160056 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 ||| || ||||| || || | || || ||| || |||||||| || || || |||| Sbjct 129656 TAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATC 129597 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 ||||||||||| |||||||| |||| | ||||| |||||||| |||||||||||||| Sbjct 129596 TTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATC 129537 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| || ||||| || | ||| |||| ||| || |||| ||| ||||| Sbjct 129536 TTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGT 129477 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| || || | ||||| ||||| Sbjct 129476 CTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq25 Length=1883024 Score = 141 bits (156), Expect = 2e-28 Identities = 174/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||||||| ||||| | |||||| || || ||||| || | ||||| || | Sbjct 1512014 GTTCAATAATACCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGT 1512073 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 |||| ||||| | || || |||| || ||||| |||||||| || ||||| ||||||| Sbjct 1512074 TATAGTCAGAAAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTT 1512133 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 ||||||| || || ||||| || ||||| || || |||||||| || | |||| Sbjct 1512134 GATCAGGAGGAATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTG 1512193 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | | ||| || || || || || ||||| || || | ||||| | ||| || ||||| Sbjct 1512194 AGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT 1512251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984429696763800