Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq218 167 4e-36 seq428 154 3e-32 seq12 152 9e-32 >seq218 Length=661058 Score = 167 bits (184), Expect = 4e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| ||| | ||||| |||||||| |||| || || ||||||||||||| Sbjct 355995 ATACCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCT 356054 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | |||| | || ||||| ||||| || |||||||| | | ||||| || ||| Sbjct 356055 GAAAGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGT 356114 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| ||| || || ||| ||||| || | ||| Sbjct 356115 GGGATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCT 356174 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || |||||||||||||||||||| | ||| || ||||| Sbjct 356175 ACTTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||||||| || || |||||||| | || | ||||| || || ||||| Sbjct 356679 ATACCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCA 356738 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | | | || || | || || ||||||||||||||||| |||||||| ||| Sbjct 356739 GACAATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGT 356798 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||||||||| |||||| ||||| || ||| || || |||| |||| Sbjct 356799 GGAATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCT 356858 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || ||||||||||||| ||| |||| || ||||||||| Sbjct 356859 ACCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCATT 356909 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| ||||| || ||||| | ||| |||||| ||| || ||||| Sbjct 352151 ATTCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCA 352210 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||||||||||||| |||||||| || | || ||||| || Sbjct 352211 GACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGA 352270 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || ||| || || || || || ||||| | |||| Sbjct 352271 GGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCT 352330 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || |||||||| |||||||| ||||||| || || ||||| Sbjct 352331 ACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | || | ||| ||||| | ||| | ||||| |||||||||||| Sbjct 356451 ATTCCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCG 356510 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || |||| |||||| || ||||| ||||| ||||| || || ||| Sbjct 356511 GAGAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGT 356570 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| ||||| ||| ||||| || |||||||| | ||| Sbjct 356571 GGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCA 356630 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| || ||||||||||| | || || | ||| || ||||| Sbjct 356631 ACTTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| || | ||| ||||| || ||||| | ||| |||||| ||| || ||||| Sbjct 357232 ATACCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCA 357291 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || |||||||| |||||||||||||| || | |||||||| || Sbjct 357292 GACAATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGA 357351 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || ||||| || || ||||||| |||| Sbjct 357352 GGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCT 357411 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAA 172056 ||||| || || || ||||||||||||| ||| |||| Sbjct 357412 ACTTCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAA 357448 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || || |||||||| | ||| | ||||| |||||| || || Sbjct 356223 ATACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCA 356282 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || || || || ||||||||||||| | |||||||| || Sbjct 356283 GAAAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGA 356342 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| |||||| ||| || || || ||||| || | || Sbjct 356343 GGAATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCA 356402 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||||||||| ||||| || ||||| | || || | || ||||||||| Sbjct 356403 ACTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453 >seq428 Length=160056 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| || || | || ||| || ||||| || || | || || || || ||||| || Sbjct 129671 ACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGA 129612 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || | || ||||||||||| ||||||||||||| | |||||||||||||| Sbjct 129611 CAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGG 129552 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||||||||| ||||| || ||||| || ||||| |||| ||| || Sbjct 129551 AATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGAC 129492 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||| ||||| ||||| ||||| || || | |||||| ||||| Sbjct 129491 CTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq12 Length=2314596 Score = 152 bits (168), Expect = 9e-32 Identities = 554/875 (63%), Gaps = 11/875 (1%) Strand=Plus/Minus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| |||||| ||||| ||||| || || ||||| || || || || ||| Sbjct 282087 TTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTGGAAATTTTG 282028 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAAT 38951 |||||||| ||||| ||||| || ||||||| || || | ||| | ||| Sbjct 282027 TTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAACTCTACTAAA 281968 Query 38952 AATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAAT 39011 | | || || |||||||| | ||| || |||| | || ||||||||||| | || Sbjct 281967 AGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATACCAATTAGG 281908 Query 39012 TTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatc 39071 | | || || |||||| | |||||| | ||| |||| || || | |||||| Sbjct 281907 CTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCGCGAATTATA 281848 Query 39072 ataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATGCA 39131 ||| | ||||||| ||| || || | || | | | | |||||| ||| Sbjct 281847 TCTGTTACTCGCTCTTTTGATGGTTT---TTGAACAATATAAGAAAACATTAAACAAGCA 281791 Query 39132 AAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 39191 ||||| ||| |||||||| || | ||| |||| |||||| ||| || | ||||||| Sbjct 281790 AAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGTCAGTCCTGGC 281731 Query 39192 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 39251 || | || | || || |||||||| || | |||||||| | |||||||| || || Sbjct 281730 ATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAAGAAAATTCCT 281671 Query 39252 TCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAA 39311 |||||| |||||||| | | || | || || || || | | |||||| Sbjct 281670 TCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACTGCTGATCCAA 281611 Query 39312 TTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT---AAAT 39368 | | |||||||| || || || || | | |||| || |||| ||||| || || Sbjct 281610 TGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGCATTGAAAAGA 281551 Query 39369 AATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCA 39428 ||||| | | ||||||||| Sbjct 281550 AATTCTT---TCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATACATTTCT 281494 Query 39429 GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATAC-TG 39487 ||||| | | ||| || || ||||| || |||||| | || || | ||| || Sbjct 281493 GAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAG-TTACTTG 281435 Query 39488 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 39547 ||||| | ||||| || || | || ||| |||||| ||||||||||| || || Sbjct 281434 TACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGCAGCAAA 281375 Query 39548 GAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTC 39607 || || | |||| | ||| ||||| |||||| || | || || ||||| | Sbjct 281374 AAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCAGTGGGC 281315 Query 39608 AAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATA 39667 ||| || || || | |||||||||||| ||||||| || || ||| | | || || || Sbjct 281314 AAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTCCTTGTA 281255 Query 39668 CATTTGATATATATCAAAATGTTCAATGGGAAATA 39702 | ||| | || || || || ||| ||||||| Sbjct 281254 CTTTTCCCAAATGTCTGGATATTGAATAGGAAATA 281220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905090878970400