Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq218 145 1e-29
seq428 143 4e-29
seq25 123 4e-23
>seq218
Length=661058
Score = 145 bits (160), Expect = 1e-29
Identities = 170/227 (75%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
||||||| ||| | || || | || || ||||| || ||| | || || |||| || |
Sbjct 356679 TGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCA- 356621
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| | ||||| ||| ||||| ||| ||||||||||||||||| |||||
Sbjct 356620 GATACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 356561
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
|| || | || |||||||| |||||| | || ||| | | || | | |||||||||
Sbjct 356560 CAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAAT 356501
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
|| ||||||||||| ||| ||||||| ||| | |||| ||||||||
Sbjct 356500 ATTCAAAAAGAATCCACTCTCCATTTGGTACTCAGATTGAGAGGAGG 356454
Score = 129 bits (142), Expect = 9e-25
Identities = 155/211 (73%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | ||||||||||| || ||||| || || |||| ||||| | |
Sbjct 356223 TGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATAACCCTTGAAGTAGAGCCATCTG 356164
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || |||| || ||| ||||| ||| || ||||| || ||||| |||||||
Sbjct 356163 ATACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAAC 356104
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| || ||||| || || ||| |||| | ||||||||||||
Sbjct 356103 AACGTCTTATTTTTGCCGGGAAACAGTTGGAAGATGGACGAACCCTTTCAGATTATAATA 356044
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242
| || || ||||| || | ||||| |||||
Sbjct 356043 TTCAGAAGGAATCTACATTACATTTGGTATT 356013
Score = 118 bits (130), Expect = 2e-21
Identities = 164/227 (72%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
||||||| || | ||||| ||||| |||||||| || || | || ||||||| || |
Sbjct 352379 TGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA- 352321
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || ||| |||| || || ||| || || |||||||| ||||| || || ||
Sbjct 352320 GACACAATTGAAAACGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAG 352261
Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210
||| | | |||||||| ||||||||||| || ||| |||||| || | ||||| ||
Sbjct 352260 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 352201
Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257
|| || ||||| || ||||||| || ||||| | ||||| ||
Sbjct 352200 ATTCAGAAAGAGAGTACCCTCCATTTGGTTTTACGTCTTAGAGGTGG 352154
Score = 118 bits (130), Expect = 2e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || |||| || | || ||||| || || ||| | || || || | |
Sbjct 356451 TGCAGATCTTTGTAAAGACTCTTACTGGAAAGACCATCACTCTAGAAGTTGAGCCATCTG 356392
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||| || ||| |||||| ||| || ||||| ||||| || || ||||
Sbjct 356391 ATACAATTGAAAACGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAAC 356332
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| || || || ||||| ||| | | || | | || || ||||
Sbjct 356331 AACGTCTAATTTTTGCTGGGAAGCAGTTAGAAGATGGTCGCACCCTTTCTGACTACAATA 356272
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| ||||||||||||||| | |||||||| || || | ||||| ||||
Sbjct 356271 TTCAAAAAGAATCGACTCTGCATTTAGTTTTGCGTCTCAGAGGTGGTA 356224
>seq428
Length=160056
Score = 143 bits (158), Expect = 4e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||||||| | || || ||||| || || || || ||| | || || |||| ||
Sbjct 129445 TGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCCG 129504
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| || ||||||| || ||||| ||| ||||||||| |||||||| || ||||
Sbjct 129505 ATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAAC 129564
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
|| | || |||||||| || |||||||| || ||| | || || | ||||| || |
Sbjct 129565 AACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAACA 129624
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258
| ||||| |||||||| | ||||| || ||| |||| || ||||||
Sbjct 129625 TCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGGT 129671
>seq25
Length=1883024
Score = 123 bits (136), Expect = 4e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | ||||| | || ||||||||||| || |||| || |||| |
Sbjct 1512250 TGCAAATTTTTGTGAAAACTCTTACCGGAAAAACAATCACCCTTGAGGTTGAACCCTCAG 1512191
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || |||||||||| || || ||| || ||||| ||||| || |||||||
Sbjct 1512190 ACACAATCGAAAATGTAAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAAC 1512131
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || | ||||| || ||||| |||||||| ||| | || | | || ||||| |
Sbjct 1512130 AGAGGTTAATTTTCGCTGGTAAGCAATTAGAAGATGGCCGTACTCTTTCTGACTATAACA 1512071
Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259
| || ||||||||||| | || || || ||||| |||||||||||||
Sbjct 1512070 TTCAGAAAGAATCGACCTTACACTTGGTGTTACGTTTAAGAGGAGGTA 1512023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786127209604960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |