Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq218 176 3e-39
seq25 129 5e-25
seq428 113 3e-20
>seq218
Length=661058
Score = 176 bits (194), Expect = 3e-39
Identities = 180/230 (78%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618
||||| || | ||||| || |||||||| ||||||||||| || ||||| ||||| | |
Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
||| || | | ||| || || || ||||||||| | || |||||||| || || || ||
Sbjct 356742 AAT-GTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGG 356800
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
|||||||||||| ||||| |||||| | || || | |||| |||||||| ||||||
Sbjct 356801 AATACCCTCTTTATCTTG-AATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTA 356859
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
| ||||| || || ||||| ||||||| || |||||||| |||||||||
Sbjct 356860 CCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCATT 356909
Score = 167 bits (184), Expect = 2e-36
Identities = 176/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
|||||| ||||| | || |||||||| || ||||||||||||||||| |||||||| |
Sbjct 356453 TCCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGA 356512
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| ||| ||| ||| || |||||||| || ||| | || || || |||||||| || ||
Sbjct 356513 GAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGG 356572
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737
||| || ||||||||||| |||||||| ||| ||| | || | || || || |||| |
Sbjct 356573 AATGCCTTCTTTGTCTTG-AATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAA 356631
Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| | ||| || ||||| ||||| | ||| || || || || |||||
Sbjct 356632 CTTCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680
Score = 147 bits (162), Expect = 2e-30
Identities = 160/210 (76%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637
|||||||| | || ||||| || ||||| |||||||| | || ||| || ||| ||
Sbjct 356016 ACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAAAGGGTTCGTCCATCTTCC 356075
Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697
| ||||| || ||| | || | | ||| ||||| || || ||||| || ||||||||
Sbjct 356076 AACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTG- 356134
Query 29698 AATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756
|||||| | |||||| |||||| || ||||| | ||||||||||| |||||||||||
Sbjct 356135 AATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACTTCAAGGGTTATAGTTTT 356194
Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||||||| ||||| || || || |||||
Sbjct 356195 ACCAGTTAATGTTTTGACGAAGATTTGCAT 356224
Score = 132 bits (146), Expect = 4e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618
||| || || | ||| | |||||||| || || ||||| |||||||| ||||| |
Sbjct 352153 TCCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGA 352212
Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678
| || | | ||| || | |||||| || ||| | ||||| | |||||| || || ||
Sbjct 352213 CAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 352272
Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
|||||| |||||||| || | || || || |||| | ||||| || |||||||
Sbjct 352273 AATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTAC 352332
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||| || || || ||||| |||||||| ||||||||||| || |||||
Sbjct 352333 TTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380
Score = 131 bits (144), Expect = 1e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| || || | ||||| || ||||| || || |||||||||||||| || || || | |
Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||||||| ||| || | || || |||||| | || | | ||| || || || |||
Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| || |||||||| |||||| | ||| || |||| | || ||||| | || ||
Sbjct 356346 ATACCTTCCTTGTCTTG-AATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAAC 356404
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787
||| ||||| || || || ||||| | || || ||||| |||||||||
Sbjct 356405 TTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453
Score = 87.8 bits (96), Expect = 1e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723
||| || || || |||||||| |||||||| || | || || || |||| | ||
Sbjct 357111 TTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTAACGTTTTCAATTGT 357170
Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783
||| || |||||||||| || || || ||||| |||||||| ||||||||||| || ||
Sbjct 357171 GTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTG 357230
Query 29784 CAT 29786
|||
Sbjct 357231 CAT 357233
>seq25
Length=1883024
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||| || ||||| | |||||| || | || |||||||| ||||||||||| || | |
Sbjct 1512025 CCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAA 1512084
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || ||| || | ||| || ||||| | || || || || ||||| || |||
Sbjct 1512085 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGA 1512144
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738
||||| || |||||||| ||| || | || ||| |||| | ||||| || |||| ||
Sbjct 1512145 ATACCTTCCTTGTCTTG-AATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAAC 1512203
Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
||||| || || ||||| || || | ||||| ||||| || |||||
Sbjct 1512204 CTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT 1512251
>seq428
Length=160056
Score = 113 bits (124), Expect = 3e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| | | |||||||| | || ||||| ||||| ||||| ||||| |
Sbjct 129670 CCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGAC 129611
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| || || ||| || | |||||| |||||| | || | | ||| || || || |||
Sbjct 129610 AAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGA 129551
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| || ||||| ||||| | |||| || ||| |||| | || || || |||| ||
Sbjct 129550 ATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACC 129491
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| | ||| || || || || ||||| || || || ||||| |||||
Sbjct 129490 TCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385200476902308
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |