Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq296 96.9 5e-15 >seq296 Length=775295 Score = 96.9 bits (106), Expect = 5e-15 Identities = 221/320 (69%), Gaps = 21/320 (7%) Strand=Plus/Plus Query 180545 CGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAA 180604 ||| |||| || || || || || || ||||| ||||| ||| | ||| |||||| | Sbjct 25569 CGAGAAGAGGGAGACTTGGGTCCGATATATGGGTTTCAGTGGCGTCATTTTGGAGCTGAG 25628 Query 180605 TATATTGAC-TGTGATACCAACTATATCGGGCA---AGGTATAGACCAATTAAGCCAAGT 180660 |||| | | || || |||| || || | | ||| || || ||||| || ||||| Sbjct 25629 TATAGAGGCATGCGAG-CCAATTA---CGCGAATGAAGGAATCGATCAATTGAGTCAAGT 25684 Query 180661 TATAGAAACTATAAAAAATAATCCCGAATGCC-GAAGAATAATCATAGATAGTTGGAATG 180719 || | || || |||||| |||| ||||| |||| |||||| || | |||||| Sbjct 25685 GATTAATACAATCAAAAATTATCC-GAATGATAGAAGGATAATCTTATGTTCGTGGAATC 25743 Query 180720 -TATC-ACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTTTATGT 180777 | | ||| ||||| | |||||||||||||| ||||| ||| | |||||||||| || Sbjct 25744 CTGTGGACA--TACCACAAATGGCTCTTCCACCCTGTCATTGTCTCGTACAATTTTTCGT 25801 Query 180778 TAGAAATAA--AATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAGGATTA 180835 | ||| | |||| || | ||| || || |||||||| || ||| | ||| | Sbjct 25802 AAATAATGACGAATTGTCTTCG-TTG----TTATACCAAAGATCGGCCGATATGGGACTG 25856 Query 180836 GGTGTACCATATAATATTGC 180855 || ||||| | || ||||| Sbjct 25857 GGGGTACCGTTCAACATTGC 25876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655247334292000