Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq310 113 4e-20 seq218 113 4e-20 seq44 111 2e-19 seq428 104 2e-17 >seq310 Length=366558 Score = 113 bits (124), Expect = 4e-20 Identities = 367/569 (64%), Gaps = 11/569 (2%) Strand=Plus/Plus Query 151275 TATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTA 151334 |||| || |||| ||| || | |||||| || ||| |||||| || | ||||| | Sbjct 101416 TATTCACTGCAAGCGATGCCAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAA 101475 Query 151335 CTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGC 151394 | ||||| | || |||||||||| | | || ||| | || |||||||||||| | Sbjct 101476 CAATTTCTGTGCATAAATTGCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTC 101535 Query 151395 GGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 151454 |||||| || || || |||| |||| | || || || |||||| ||||| | || | Sbjct 101536 TGTTGCATGCATCTTTATATAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTA 101595 Query 151455 TGTTTCGCATTAATGTAACCGCGGGCATTTGCTCGCGAA----ACTGGCCTTTATCCTCA 151510 | || ||| | | ||| | || | ||| | | |||| | ||| Sbjct 101596 TAGCATGCCACAATTT----CTGAGCAGGTACTTGAGAAATGTATTTACCTTCTGCTTCA 101651 Query 151511 TAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGTTGAGCTTAGGACACTCG 151570 || | || ||| | | |||||| | || || | |||||| || ||||| | Sbjct 101652 TACTTTTCATACAACTGTTCAAACTTTTCTCCCCAATTATCGTAAAGTCCGGGACATTGA 101711 Query 151571 TTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATATCCGGA 151630 | ||||||||| | |||||| || |||| |||||| | ||||||||| | ||| || Sbjct 101712 TGAGGACACATCAGTGACCAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGT 101771 Query 151631 ACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTTCGACGC 151690 | ||||| || | | |||||| | ||| | | ||||| | || | ||| | Sbjct 101772 ATCCATAGGGCATAAAACAAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTC 101831 Query 151691 ATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGGGCGCCT 151750 | | ||||| || | ||||| |||||| ||||||| || | || || || Sbjct 101832 AAATTTAAAAATTCAAATATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCA 101891 Query 151751 TTTCGCTTG---CCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGCAGCATT 151807 || |||| || |||||||| || | | | | |||||||||||| || ||||| Sbjct 101892 GGTCTCTTGTTACCTCCTTGATCTACATATCTGGCTAAATTATTAAAAACACGAAGCATA 101951 Query 151808 GGTAGCAGTCCGCTGGCGGTGCCGTTCGT 151836 || | | ||| | | |||||||| || Sbjct 101952 GGAACTAAACCGTTCGAAGTGCCGTTGGT 101980 >seq218 Length=661058 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||| ||||| ||||| | ||| ||||| || ||||||||||| | Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || || ||||| | ||||||||| ||| | |||| ||||||||| || ||||| Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || || | | ||| | ||||||| ||||||||| Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || || ||||| || || |||||||| Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| || | | || ||||| | || ||||||||||| || || |||||| Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||| |||||||| || ||| |||| | | |||||||| || || Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 |||||||||||||| ||||||| ||| | | || | || |||| ||||| ||| Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 || | ||| | ||| || || || | || || ||||| ||||||||| || Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATACCT 356684 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | ||||||||||||||||| || |||||||| || ||||||||||| | Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| || || || |||||| | || | | ||| || || || || Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || ||||| || |||||| |||| | || | ||||| | |||||||| Sbjct 356802 ATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACC 356861 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | || || || || | ||| || || || || ||||| Sbjct 356862 TCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||| ||||| ||||| | ||| ||||| || ||||||||||| | Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | ||| ||||||||| | |||| |||||| || || ||||| Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || || | | ||| | ||||||| ||||||||| Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACT 357414 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTAC 137399 || | || | || || || || | ||| || || Sbjct 357415 TCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAAC 357449 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| | ||||||||||||||| | || ||||||||||| || ||||| || Sbjct 356226 CCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAA 356285 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | || || |||||| | || |||||||| || || ||||| Sbjct 356286 AGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGA 356345 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | ||| | || || | || || ||| Sbjct 356346 ATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACT 356405 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||||| || || | || ||||| || || ||||| Sbjct 356406 TCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452 >seq44 Length=1668621 Score = 111 bits (122), Expect = 2e-19 Identities = 120/158 (76%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 54800 GCTTCAATGTTGCCCAAATCACCGACGTGTCTCACCGCAGCGTTGGGCGCACCATGAT-- 54857 ||||| | ||| || | ||| || ||||||||||| | || | || || ||||||| Sbjct 466054 GCTTCTACGTTTCCAAGATCGCCAACGTGTCTCACGTCTGCATCAGGAGCTCCATGATCT 465995 Query 54858 -TGCTACCCGTCGGATTAAAATGTTCTCCGGCCGAAGTACAGCCGTTGCTGATGTCGCCA 54916 || || || |||| ||||| | ||||| ||| ||||||||||| || |||| ||| Sbjct 465994 TTGTTATGCG---GATTGAAATGAGCACCGGCTGAAATACAGCCGTTGGTGTTGTCACCA 465938 Query 54917 AATTCGTGTACGTGAAAACCGTGCAGTCCTTTCGGCAA 54954 |||||||| || ||||| ||||| |||||||||| ||| Sbjct 465937 AATTCGTGCACATGAAATCCGTGGAGTCCTTTCGTCAA 465900 >seq428 Length=160056 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 137200 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 137259 || || ||||| | ||| ||||| ||||| ||||||||||| || || | ||| Sbjct 129655 AAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCT 129596 Query 137260 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 137319 || | |||||| |||||| | || |||||||| || || || || || |||||||| || Sbjct 129595 TCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCT 129536 Query 137320 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTC 137379 |||||| || | | ||| | || || | ||||| || || | ||| | ||| Sbjct 129535 TGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTC 129476 Query 137380 TTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || || || || || || |||||||||||||| Sbjct 129475 TTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488519646081600