Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq218 203 6e-47 seq428 163 6e-35 seq25 161 2e-34 seq137 102 2e-16 seq135 87.8 4e-12 >seq218 Length=661058 Score = 203 bits (224), Expect = 6e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||||| |||||| |||||||| |||||||| || ||||| || |||| Sbjct 356224 TACCACCTCTGAGACGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAG 356283 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| ||||||| || || |||||||| ||||| | |||||| ||||||| Sbjct 356284 AAAGGGTGCGACCATCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAG 356343 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || ||||| || |||||||| |||||| || || | Sbjct 356344 GAATACCTTCCTTGTCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGCTCAA 356403 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| | ||| || ||||| || || | ||||||||||| ||||||||| Sbjct 356404 CTTCTAGAGTGATGGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCATT 356453 Score = 188 bits (208), Expect = 1e-42 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||||||| | || || || || ||||| |||||||| || ||||||||||| || Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| ||||||||||| |||||||||| || || |||||||| || Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || |||||||| |||||||| ||||| ||||| ||||| ||||| ||| Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| || || || | ||||| || || || ||||| Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 176 bits (194), Expect = 9e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | ||||| |||||| || || || ||||||||||| || || ||||||| Sbjct 356680 TACCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAG 356739 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | ||||| ||||| || || || |||||||| |||| ||||||||| ||||| | Sbjct 356740 ACAATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTG 356799 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || ||||||||||| || || ||||| || || || || ||| ||||||| Sbjct 356800 GAATACCCTCTTTATCTTGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTA 356859 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | || || || || || || | ||||| ||||| ||||||||| Sbjct 356860 CCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCATT 356909 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | ||| | ||| || || || ||| |||||||| || || |||||||| Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | ||||||| ||||| | |||||| || ||||| || | | ||| || |||||||| Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || || |||||||| || || ||||||||| Sbjct 352274 ATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACT 352333 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || || || || || ||||| || ||||| || ||||| Sbjct 352334 TCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 |||||||| ||||| ||||||||||| || || ||| || ||||| | ||||| || Sbjct 356028 GTAGATTCCTTCTGAATATTATAATCTGAAAGGGTTCGTCCATCTTCCAACTGTTTCCCG 356087 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||| || || | |||||||||||| || || |||||||| |||||||| || ||||| Sbjct 356088 GCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGAATTTTGGCTTTG 356147 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || ||||| || |||||| || |||||||| | ||||| || || || || || || Sbjct 356148 ACGTTTTCTATTGTATCAGATGGCTCTACTTCAAGGGTTATAGTTTTACCAGTTAATGTT 356207 Query 82794 TTTACAAATATCTGCAT 82810 || || || || ||||| Sbjct 356208 TTGACGAAGATTTGCAT 356224 Score = 143 bits (158), Expect = 5e-29 Identities = 176/239 (74%), Gaps = 5/239 (2%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | ||| | ||| || || || ||| |||||||| || || ||||||| Sbjct 357233 TACCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAG 357292 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||| ||||| | ||| || |||||||| || | | |||||| ||||||| Sbjct 357293 ACAATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAG 357352 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || || ||||| || || ||||||||||| || || ||||||| Sbjct 357353 GAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTA 357412 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATTT 82820 |||||| || || || || || || | ||||| |||| | ||| |||||||||| Sbjct 357413 CTTCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAACAAGT---TGC--TATTATATTT 357466 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 |||||| |||||||| || ||||| || || || ||||| || || ||||||||||| || Sbjct 352030 TTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGT 352089 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || ||||||||||||| || || || || || || | ||||| ||||| ||||| Sbjct 352090 GTCTGACGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAGTGTCTTAACAAAAATCTG 352149 Query 82808 CATT 82811 |||| Sbjct 352150 CATT 352153 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 |||||| |||||||| || ||||| || || || ||||| || || || |||||||| || Sbjct 357111 TTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTAACGTTTTCAATTGT 357170 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 || ||||||||||||| || || || || || || ||||| || ||||| || || Sbjct 357171 GTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTG 357230 Query 82808 CAT 82810 ||| Sbjct 357231 CAT 357233 >seq428 Length=160056 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| | | || || |||| || ||||| || || || || |||||||| Sbjct 129671 ACCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGA 129612 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | | || ||||| | ||||||||||||||| ||||| | |||||| || || || Sbjct 129611 CAAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGG 129552 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 |||||||| |||||||| || ||||| || |||||||| || ||||| ||||| || Sbjct 129551 AATTCCTTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGAC 129492 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 129491 CTCTAAAGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq25 Length=1883024 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| ||||| | || ||||| | || ||||||||||| || ||||| |||| Sbjct 1512023 TACCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAG 1512082 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||||| ||| || ||||| || |||| || |||||||| |||| Sbjct 1512083 AAAGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAG 1512142 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||| || ||||||||||| || || || ||||| | Sbjct 1512143 GAATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAA 1512202 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || || || || | || || ||||| || ||||| Sbjct 1512203 CCTCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT 1512251 >seq137 Length=480032 Score = 102 bits (112), Expect = 2e-16 Identities = 149/207 (72%), Gaps = 8/207 (4%) Strand=Plus/Minus Query 50700 TGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTAAA 50759 |||||||| ||||||||| | || | ||||||||||||||||| | || ||| Sbjct 193203 TGGATATGATATTTTTTCACAAATTAACTGAGCTATTCTATCACCTATCTCTATTACAAA 193144 Query 50760 TTGTGTA---GAACCGAAATTAAATAATAGAACACTTACGTT-ACCTCTATAGTCTGAGT 50815 || | || ||| ||||||||||||| || |||| | |||||| |||||| || Sbjct 193143 TTCTTTATTGGAAT---AATTAAATAATAGTAC-CTTAATTACACCTCTGTAGTCTTCGT 193088 Query 50816 CAATTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTA 50875 |||| ||||| || |||||||||||| ||| || || || || |||| ||||| | Sbjct 193087 CAATAACACCTGCTCCTACGTCTATAGAATGCTTTACGGCTAGTCCAGATCGTGGAGCAA 193028 Query 50876 TTCTACCGTAGTATCCATTAGGTATTT 50902 | | |||||| | ||| | |||| || Sbjct 193027 TACGACCGTAATGACCAATCGGTAGTT 193001 >seq135 Length=992699 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/187 (71%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 50700 TGGATATGCTATTTTTTCGAATATGATTTGAGCTATTCTATCACCCTTGGATACATTAAA 50759 |||||||| ||||||||| | | | ||||||||||||||||| | || ||| Sbjct 566694 TGGATATGATATTTTTTCACAATTTAACTGAGCTATTCTATCACCTATCTCTAGTACAAA 566753 Query 50760 TTGTGTAGAACCGAAATTAAATAATAGAACACTTACGT-TACCTCTATAGTCTGAGTCAA 50818 || | || | ||||||||||||| || |||| | |||||| |||||| ||||| Sbjct 566754 TTCTTTATTAGAATAATTAAATAATAGTAC-CTTAATTACACCTCTGTAGTCTTCGTCAA 566812 Query 50819 TTACACCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTC 50878 | ||| | || |||||||||||| ||| ||| || || |||| ||||| || | Sbjct 566813 TAACATCTGCTCCTACGTCTATAGAATGATTGGCGGCTAGTTGAGATCATGGAGCAATAC 566872 Query 50879 TACCGTA 50885 |||||| Sbjct 566873 GACCGTA 566879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981777032311932