Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq195 89.7 7e-13
seq54 89.7 7e-13
>seq195
Length=555810
Score = 89.7 bits (98), Expect = 7e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | ||||||||| |||||||||
Sbjct 94770 AGTCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCCGGGTTCGAT 94711
Query 11787 TCCCCGACGAGGAGGG 11802
|||| | || ||||||
Sbjct 94710 TCCCGGCCGGGGAGGG 94695
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | ||||||||| |||||||||||
Sbjct 94768 TCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCCGGGTTCGATTC 94709
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 94708 CCGGCCGGGGAG 94697
Score = 82.4 bits (90), Expect = 1e-10
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| || | |||| |||||||| ||||||||| | |||| |||||||| |||||||||
Sbjct 94697 CTCCCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 94756
Query 139413 TACTAACGAGGATTT 139427
||||| |||||| ||
Sbjct 94757 TACTACCGAGGACTT 94771
>seq54
Length=1232090
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||||||||| |||| ||||| | ||||||||| |||||||||||
Sbjct 914860 TCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCCGGGTTCGATTC 914801
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 914800 CCGGCCGGGGAG 914789
Score = 86.0 bits (94), Expect = 8e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410
|||||| || | |||| |||||||| ||||||||| | |||| |||||||| |||||||
Sbjct 914787 AACTCCCCGGCCGGGAATCGAACCCGGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 914846
Query 139411 TATACTAACGAGGATTT 139427
||||||| |||||| ||
Sbjct 914847 TATACTACCGAGGACTT 914863
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||||||| |||||||||||| ||||| |||| ||||| | ||||||||| |||||||||
Sbjct 914862 AGTCCTCGGTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCCGGGTTCGAT 914803
Query 11787 TCCCCGACGAGGAG 11800
|||| | || ||||
Sbjct 914802 TCCCGGCCGGGGAG 914789
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652812255686720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |