Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq310 190 5e-43 seq518 109 1e-18 seq12 109 1e-18 seq192 89.7 1e-12 >seq310 Length=366558 Score = 190 bits (210), Expect = 5e-43 Identities = 299/424 (71%), Gaps = 13/424 (3%) Strand=Plus/Minus Query 110723 ATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| ||||||| ||||| |||| ||| | |||||||||||||| ||||| || Sbjct 101921 ATATGTAGATCAAGGAGGTAACAAGAGACCTGGTGCTTTTGCTATCTATCTTGAACCATG 101862 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 |||| |||| ||||||||||| ||| | | |||||| |||| ||||| || Sbjct 101861 GCATGCAGACATATTTGAATTTTTAAATTTGAAAAAAAATACAGGAAAAGAAGAGATGAG 101802 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 |||| | ||||| |||||||| | ||||| ||||||| || |||||| | ||| || | Sbjct 101801 AGCAAGAGATTTGTTTTATGCCCTATGGATACCAGATTTGTTTATGAAAAGAGTTGAACA 101742 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||||| ||||| || ||||||||||||| | ||| || || | ||| | || Sbjct 101741 AAATGGGCACTGGTCACTGATGTGTCCTCATCAATGTCCCGGACTTTACGATAATTGGGG 101682 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA----GTTTCGCAAAC 111015 | || |||||||| | | || ||||| |||||| |||||| || |||| | Sbjct 101681 AGAAAAGTTTGAACAGTTGTATGAAAAGTATGAAGCAGAAGGTAAATACATTTC----TC 101626 Query 111016 AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 || | || ||||| || | ||| || ||| || ||||| |||||||| |||| Sbjct 101625 AAGTACCTGCTCAGAAATTGTGGCATGCTATAATTGTTTCTCAAGTCGAAACTGGGACTC 101566 Query 111076 CTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 ||| || | ||||||||| ||| || | ||| |||||| || ||||||||| Sbjct 101565 CTTTCATGCTATATAAAGATGCAT-GCAACAGAAAAAGCAATCAACAAAACTTAGGAACA 101507 Query 111135 ATTA 111138 |||| Sbjct 101506 ATTA 101503 >seq518 Length=120341 Score = 109 bits (120), Expect = 1e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005 |||| ||| || | |||| | |||| ||||| ||| | ||||| ||||| ||||| Sbjct 12724 CAAAAATCGGGAAAACCTCTGAAGGCTATTAAAGCACGTCTAAAAGGAAAAGAAGGTCGG 12783 Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065 |||||||| ||||| ||||| ||||||||||||||| ||| ||| ||| ||||| || Sbjct 12784 ATTCGAGGAAATCTTATGGGTAAACGTGTTGATTTTTCGGCACGAACTGTTATCACTCCA 12843 Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTAA 305123 ||| || | || | || | || | ||||| |||| ||| ||||| ||| || | Sbjct 12844 GATCCTAATCTTCGAATTGACCAAGTTGGAGTGCCAA--GAAGCATTGCACAAAATCTTA 12901 Query 305124 CATTTCCAGAGAAAGT 305139 ||||||| || | ||| Sbjct 12902 CATTTCCCGAAATAGT 12917 >seq12 Length=2314596 Score = 109 bits (120), Expect = 1e-18 Identities = 263/389 (68%), Gaps = 12/389 (3%) Strand=Plus/Plus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATT--CAAGATGATTCCGCTAATTTTTC 131853 |||| ||||| || || |||||| || | ||||| || | || | | || || | Sbjct 281583 TTAAGAAGAAGGCTGATTGGGCTCTTCATTGGATCAGCAGTAAGAATGC---AACATTCC 281639 Query 131854 TACAA-GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTG 131912 | || || |||| || ||||| ||| ||||| || ||||||||||| ||| || Sbjct 281640 CAGAACGAGTTGTTGCATTTGCAGCTGTGGAAGGAATTTTCTTTTCAGGAAGTTTTGCTG 281699 Query 131913 CTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCA 131972 ||||||||||||| ||||| || || | ||||| ||||| |||| || ||| | | | Sbjct 281700 CTATCTTTTGGCTCAAGAAACGGGGTCTTATGCCAGGACTGACATTTTCTAATGAGCTTA 281759 Query 131973 TCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG 132032 | || | ||||||| |||||| ||| |||||| ||||| | | | ||| | Sbjct 281760 TTTCTCGCGATGAAGGTTTGCATTGTGATTTTGCTTGTTTAATGTTTTCTTATATTGTTC 281819 Query 132033 ATAAACTTGATGAAAATA-ATATTAA-ACAACTTATAAGCGAAGCAGTTGATATCGAGAA 132090 | |||| || |||| | | ||| | | | || |||| |||||| | || || | Sbjct 281820 AAAAAC--CATCAAAAGAGCGAGTAACAGATATAATTCGCGATGCAGTTAAAATTGAACA 281877 Query 132091 GGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAA-TGCTGACTCTATGA 132149 ||| ||| | || || ||||||||| | | ||||| ||||| ||| ||| ||| Sbjct 281878 GGAATTTTTAACTGATGCTTTGCCTGTAAGCCTAATTGGTATGAATTGCAAACT-GATGT 281936 Query 132150 AGGAGTACATTGAATTCGTTGCTGATCGT 132178 |||| || ||||| || ||||| ||| Sbjct 281937 CTCAGTATATCGAATTTGTAGCTGACCGT 281965 >seq192 Length=864948 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264 |||| |||||| ||| | || || | || |||| | |||||||||| |||||| Sbjct 235743 ATTTGAAAAGAACACATCAACGTTTCGTCAACCGTCATCATTGCACCAGCATTGTCGAAT 235802 Query 167265 TCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTC 167323 || | | || ||||| ||||| ||||||| || |||| || ||| || ||| || || Sbjct 235803 TC-TCCACAATAATTCGGTGCGGAAAATAACGTGACTAGTTGACGTTTAGCAAAGAACTC 235861 Query 167324 ATAACCATCTTCAACAACTTCATGGGCAC-GTATTACAAGTTCAACTCCTAtttttttAA 167382 || |||||||||||||||| ||| || | | || ||||| ||| || | | ||||| Sbjct 235862 GTATCCATCTTCAACAACTTGATGAGCTCGGCATATCAAGTCCAAGTCGTGCCTGTTTAA 235921 Query 167383 GAA 167385 ||| Sbjct 235922 GAA 235924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186752158316468