Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq310 190 5e-43
seq518 109 1e-18
seq12 109 1e-18
seq192 89.7 1e-12
>seq310
Length=366558
Score = 190 bits (210), Expect = 5e-43
Identities = 299/424 (71%), Gaps = 13/424 (3%)
Strand=Plus/Minus
Query 110723 ATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779
|||||| ||||||| ||||| |||| ||| | |||||||||||||| ||||| ||
Sbjct 101921 ATATGTAGATCAAGGAGGTAACAAGAGACCTGGTGCTTTTGCTATCTATCTTGAACCATG 101862
Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839
|||| |||| ||||||||||| ||| | | |||||| |||| ||||| ||
Sbjct 101861 GCATGCAGACATATTTGAATTTTTAAATTTGAAAAAAAATACAGGAAAAGAAGAGATGAG 101802
Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899
|||| | ||||| |||||||| | ||||| ||||||| || |||||| | ||| || |
Sbjct 101801 AGCAAGAGATTTGTTTTATGCCCTATGGATACCAGATTTGTTTATGAAAAGAGTTGAACA 101742
Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959
|||||| ||||| || ||||||||||||| | ||| || || | ||| | ||
Sbjct 101741 AAATGGGCACTGGTCACTGATGTGTCCTCATCAATGTCCCGGACTTTACGATAATTGGGG 101682
Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA----GTTTCGCAAAC 111015
| || |||||||| | | || ||||| |||||| |||||| || |||| |
Sbjct 101681 AGAAAAGTTTGAACAGTTGTATGAAAAGTATGAAGCAGAAGGTAAATACATTTC----TC 101626
Query 111016 AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075
|| | || ||||| || | ||| || ||| || ||||| |||||||| ||||
Sbjct 101625 AAGTACCTGCTCAGAAATTGTGGCATGCTATAATTGTTTCTCAAGTCGAAACTGGGACTC 101566
Query 111076 CTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134
||| || | ||||||||| ||| || | ||| |||||| || |||||||||
Sbjct 101565 CTTTCATGCTATATAAAGATGCAT-GCAACAGAAAAAGCAATCAACAAAACTTAGGAACA 101507
Query 111135 ATTA 111138
||||
Sbjct 101506 ATTA 101503
>seq518
Length=120341
Score = 109 bits (120), Expect = 1e-18
Identities = 143/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 304946 CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTCGT 305005
|||| ||| || | |||| | |||| ||||| ||| | ||||| ||||| |||||
Sbjct 12724 CAAAAATCGGGAAAACCTCTGAAGGCTATTAAAGCACGTCTAAAAGGAAAAGAAGGTCGG 12783
Query 305006 ATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACACCT 305065
|||||||| ||||| ||||| ||||||||||||||| ||| ||| ||| ||||| ||
Sbjct 12784 ATTCGAGGAAATCTTATGGGTAAACGTGTTGATTTTTCGGCACGAACTGTTATCACTCCA 12843
Query 305066 GATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACTAA 305123
||| || | || | || | || | ||||| |||| ||| ||||| ||| || |
Sbjct 12844 GATCCTAATCTTCGAATTGACCAAGTTGGAGTGCCAA--GAAGCATTGCACAAAATCTTA 12901
Query 305124 CATTTCCAGAGAAAGT 305139
||||||| || | |||
Sbjct 12902 CATTTCCCGAAATAGT 12917
>seq12
Length=2314596
Score = 109 bits (120), Expect = 1e-18
Identities = 263/389 (68%), Gaps = 12/389 (3%)
Strand=Plus/Plus
Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATT--CAAGATGATTCCGCTAATTTTTC 131853
|||| ||||| || || |||||| || | ||||| || | || | | || || |
Sbjct 281583 TTAAGAAGAAGGCTGATTGGGCTCTTCATTGGATCAGCAGTAAGAATGC---AACATTCC 281639
Query 131854 TACAA-GACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTG 131912
| || || |||| || ||||| ||| ||||| || ||||||||||| ||| ||
Sbjct 281640 CAGAACGAGTTGTTGCATTTGCAGCTGTGGAAGGAATTTTCTTTTCAGGAAGTTTTGCTG 281699
Query 131913 CTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCA 131972
||||||||||||| ||||| || || | ||||| ||||| |||| || ||| | | |
Sbjct 281700 CTATCTTTTGGCTCAAGAAACGGGGTCTTATGCCAGGACTGACATTTTCTAATGAGCTTA 281759
Query 131973 TCTCGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTG 132032
| || | ||||||| |||||| ||| |||||| ||||| | | | ||| |
Sbjct 281760 TTTCTCGCGATGAAGGTTTGCATTGTGATTTTGCTTGTTTAATGTTTTCTTATATTGTTC 281819
Query 132033 ATAAACTTGATGAAAATA-ATATTAA-ACAACTTATAAGCGAAGCAGTTGATATCGAGAA 132090
| |||| || |||| | | ||| | | | || |||| |||||| | || || |
Sbjct 281820 AAAAAC--CATCAAAAGAGCGAGTAACAGATATAATTCGCGATGCAGTTAAAATTGAACA 281877
Query 132091 GGAGTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAA-TGCTGACTCTATGA 132149
||| ||| | || || ||||||||| | | ||||| ||||| ||| ||| |||
Sbjct 281878 GGAATTTTTAACTGATGCTTTGCCTGTAAGCCTAATTGGTATGAATTGCAAACT-GATGT 281936
Query 132150 AGGAGTACATTGAATTCGTTGCTGATCGT 132178
|||| || ||||| || ||||| |||
Sbjct 281937 CTCAGTATATCGAATTTGTAGCTGACCGT 281965
>seq192
Length=864948
Score = 89.7 bits (98), Expect = 1e-12
Identities = 132/183 (72%), Gaps = 3/183 (2%)
Strand=Plus/Plus
Query 167205 ATTTCAAAAGAGCACCTAAAATCTTTATTAATTATCATTACACCACCAGCATTATCGAAT 167264
|||| |||||| ||| | || || | || |||| | |||||||||| ||||||
Sbjct 235743 ATTTGAAAAGAACACATCAACGTTTCGTCAACCGTCATCATTGCACCAGCATTGTCGAAT 235802
Query 167265 TCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTACGATTGAAAAATAATTC 167323
|| | | || ||||| ||||| ||||||| || |||| || ||| || ||| || ||
Sbjct 235803 TC-TCCACAATAATTCGGTGCGGAAAATAACGTGACTAGTTGACGTTTAGCAAAGAACTC 235861
Query 167324 ATAACCATCTTCAACAACTTCATGGGCAC-GTATTACAAGTTCAACTCCTAtttttttAA 167382
|| |||||||||||||||| ||| || | | || ||||| ||| || | | |||||
Sbjct 235862 GTATCCATCTTCAACAACTTGATGAGCTCGGCATATCAAGTCCAAGTCGTGCCTGTTTAA 235921
Query 167383 GAA 167385
|||
Sbjct 235922 GAA 235924
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186752158316468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |