Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq218 116 9e-21 seq428 100 7e-16 seq25 89.7 1e-12 >seq218 Length=661058 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || |||||||| ||||| ||||||| ||| || |||||| | ||| Sbjct 352365 AAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCAGACACAATTGAAAAC 352306 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| ||| | | || || Sbjct 352305 GTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAGCAACGTTTGATTTTT 352246 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||||||| || |||||| | ||||||||| | ||||||||| | Sbjct 352245 GCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAACATTCAGAAAGAGAGT 352186 Query 206365 ACTCTTCACCTTGTTTT 206381 || || || | ||||| Sbjct 352185 ACCCTCCATTTGGTTTT 352169 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || ||||| ||||| ||||||| ||| || |||||| | ||| Sbjct 357446 AAGACACTAACTGGTAAAACAATCACACTGGAAGTAGAACCGTCAGACACAATTGAAAAT 357387 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| ||| | | || || Sbjct 357386 GTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAACGTTTGATTTTT 357327 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| || || ||| | ||||||||| | ||||||||| | Sbjct 357326 GCTGGTAAGCAATTGGAAGATGGTAGAACATTGTCTGATTACAACATTCAGAAAGAGAGT 357267 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || | ||||| | ||||| Sbjct 357266 ACCCTCCATTTGGTTTTACGTCTTCG 357241 Score = 95.1 bits (104), Expect = 3e-14 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGA-ATC 206243 || || ||||| || |||||||||||||| ||||| ||| || || ||| | || | Sbjct 356665 AAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCAGATACAATTGAGAAT 356606 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 |||||||||| |||||||| |||||||| ||| || || || || | ||||| Sbjct 356605 GTTAAAGCAAAA-ATTCAAGACAAAGAAGGCATTCCACCAGATCAGCAGAGGTTAATCTT 356547 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || ||||| || |||||||||| | || | ||||||| || | || ||||| || Sbjct 356546 TGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAATATTCAAAAAGAATC 356487 Query 206364 TACTCTTCA 206372 ||||| || Sbjct 356486 CACTCTCCA 356478 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || || ||||| || || | ||||| || ||||| ||| | ||| Sbjct 356210 CAAAACATTAACTGGTAAAACTATAACCCTTGAAGTAGAGCCATCTGATACAATAGAAAA 356151 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| ||| |||||||| || ||||| || || || ||| | ||||| | Sbjct 356150 CGTCAAAGCCAAA-ATTCAAGACAAGGAAGGTATCCCACCAGATCAACAACGTCTTATTT 356092 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | ||||| || ||||||||||||||| | || | | ||||| || | ||||| || | Sbjct 356091 TTGCCGGGAAACAGTTGGAAGATGGACGAACCCTTTCAGATTATAATATTCAGAAGGAAT 356032 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||| | || | || ||||| |||||| Sbjct 356031 CTACATTACATTTGGTATTGAGGCTTCGA 356003 >seq428 Length=160056 Score = 100 bits (110), Expect = 7e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || |||||||| || || ||| || || ||| ||||| || ||| | Sbjct 129468 ACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCCGATACAATCGAAAATGTGAAGGCA 129527 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| |||||||||||| || ||| ||| | || || || || ||||| Sbjct 129528 AAAATCCAAGATAAAGAAGGAATTCCACCTGACCAACAACGTCTAATTTTTGCTGGAAAA 129587 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || ||||||||||| | |||||| | ||||||||| |||| || || || || Sbjct 129588 CAATTGGAAGATGGCCGTACTTTGTCTGATTACAACATCCAAAAGGAATCGAC 129640 >seq25 Length=1883024 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||||||| ||||| | || || ||| || |||||| ||||| Sbjct 1512236 AAAACTCTTACCGGAAAAACAATCACCCTTGAGGTTGAACCCTCAGACACAATCGAAAAT 1512177 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||||||||| || ||||| ||| || || || || | || ||| Sbjct 1512176 GTAAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAGAGGTTAATTTTC 1512117 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| || |||||||| | ||| | | || || ||| | |||||||| || Sbjct 1512116 GCTGGTAAGCAATTAGAAGATGGCCGTACTCTTTCTGACTATAACATTCAGAAAGAATCG 1512057 Query 206365 AC 206366 || Sbjct 1512056 AC 1512055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181760413388948