Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_026268.1
Length=139132
Score E
Sequences producing significant alignments: (Bits) Value
seq218 132 4e-26
seq428 104 2e-17
>seq218
Length=661058
Score = 132 bits (146), Expect = 4e-26
Identities = 169/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || | || || ||| ||||||| | ||||| ||| ||| |
Sbjct 356680 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAA-CCATC 356622
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || ||| | || ||| ||||||| || ||||| || || || || |||||
Sbjct 356621 AGATACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCA 356562
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353
||| || | || | | || |||||||| ||||||| | | | || |||||| ||
Sbjct 356561 GCAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAA 356502
Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403
|||||||||||||||||| | ||||| || | ||||||||||||||||
Sbjct 356501 TATTCAAAAAGAATCCACTCTCCATTTGGTACTCAGATTGAGAGGAGGAA 356452
Score = 120 bits (132), Expect = 3e-22
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
||||| | ||||| || ||| |||| || ||| | ||||| | || || ||| |
Sbjct 356908 ATGCAGATTTTTGTTAAGACACTAACTGGTAAAACAATCACCCTTGAGGTAGAACCGTCT 356849
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
|| || || ||| | ||||| |||||| |||||||||||||| || || || ||
Sbjct 356848 GACACAATAGAGAACGTAAAGGCTAAAATTCAAGATAAAGAGGGTATTCCACCAGACCAA 356789
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352
|||||| | |||| | ||||| || || ||||||| ||| | |||| | ||||||
Sbjct 356788 CAAAGATTAATTTTTGCTGGCAAGCAGCTTGAAGATGGTAGGACATTGTCTG--ATTACA 356731
Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
| || || |||||||||||| |||||||||| || | | ||||||||
Sbjct 356730 ACATCCAGAAAGAATCCACCCTTCATTTAGTTTTGCGTCTTAGAGGAGG 356682
Score = 93.3 bits (102), Expect = 4e-14
Identities = 154/218 (71%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || ||||||||||| || ||| | || || | ||||| | ||||| |
Sbjct 356224 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATAACCCTTGAAGTAG-AGCCATC 356166
Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293
||||| || || | || ||| |||||| || || || ||||| || || |||||
Sbjct 356165 TGATACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCA 356106
Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351
||| | || |||| | ||| ||||| | ||||||| ||| | ||| |||||
Sbjct 356105 ACAACGTCTTATTTTTGCCGGGAAACAGTTGGAAGATGGACGAACCCTTTCA--GATTAT 356048
Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAG 25389
|||||||| || ||||| || | ||||| || || ||
Sbjct 356047 AATATTCAGAAGGAATCTACATTACATTTGGTATTGAG 356010
>seq428
Length=160056
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234
|||||| | || || || || ||||| || || | ||||| | || |||||| | |
Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503
Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294
||||| ||||| | || || |||||| |||||||| || || || || || ||
Sbjct 129504 GATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAA 129563
Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354
||| | || |||| | || |||||| | ||||||| | | | | ||||||||
Sbjct 129564 CAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAAC 129623
Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401
|| ||||| ||||| || | ||||| || ||||||||||| |||||
Sbjct 129624 ATCCAAAAGGAATCGACATTGCATTTGGTCTTAAGATTGAGGGGAGG 129670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445072212044160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |