Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq12 338 5e-88
seq169 159 3e-34
seq296 149 5e-31
seq301 116 3e-21
>seq12
Length=2314596
Score = 338 bits (374), Expect = 5e-88
Identities = 623/904 (69%), Gaps = 16/904 (2%)
Strand=Plus/Plus
Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735
||||||| ||||||||| ||||| || | ||||| |||||||||| ||||| |||
Sbjct 281189 TTGCTTAGAGAAAATCCAAGAAGGTTCGTAATATTTCCTATTCAATATCCAGACATTTGG 281248
Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795
||| |||||| |||| | || || || |||||| |||||||||| || | ||||
Sbjct 281249 GAAAAGTACAAGGAAGCTGAAGCTTCCTTCTGGACAACAGAAGAAGTAGACCTTTCTAAG 281308
Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855
||| | || || ||| | || | | |||| ||||| || || || |
Sbjct 281309 GACCTTGCCCACTGGGATAAGTTGTCAAATGATGAAAGGCATTTCATTTCACATGTACTT 281368
Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG-CA 43914
|| ||||||||||| || || || || |||||||| | || || | || | ||
Sbjct 281369 GCCTTTTTTGCTGCATCTGATGGAATTGTAAATGAAAACCTTGT-AGAGAGATTCAGTCA 281427
Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974
|||||| ||| || | || || || || |||||||| || ||||||||||| ||||||||
Sbjct 281428 AGAAGTACAAGTAACTGAGGCTCGTTGCTTTTATGGTTTCCAAATTGCCATTGAAAATAT 281487
Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA-GC 44033
||||| |||||||| ||| ||| || || || || || || | ||||| |
Sbjct 281488 CCATTCAGAAATGTATAGTACTCTCATTGACACTTATATATTTGACCCAGAAGAGAAAGA 281547
Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093
|| || || ||||| || ||||| | ||| |||| | || || || ||||| |
Sbjct 281548 ATTTCTT-TTCAATGCTATTGAAACCATGCCTTGTGTTAAGAAGAAGGCTGATTGGGCTC 281606
Query 44094 TTAAATGGATAA--ATTCA-AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150
|| | ||||| | | | | |||| | || ||||||| |||| || ||||||| ||
Sbjct 281607 TTCATTGGATCAGCAGTAAGAATGCAACATTCCCAGAACGAGTTGTTGCATTTGCAGCTG 281666
Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210
||||||| ||||||||||||||| ||||| || || |||||| | |||||||| |||
Sbjct 281667 TGGAAGGAATTTTCTTTTCAGGAAGTTTTGCTGCTATCTTTTGGCTCAAGAAACGGGGTC 281726
Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270
| ||||| || |||| ||||| |||||| | || ||| |||||||| || ||||| |
Sbjct 281727 TTATGCCAGGACTGACATTTTCTAATGAGCTTATTTCTCGCGATGAAGGTTTGCATTGTG 281786
Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330
|||||||||| || | || ||| | | | || || ||| || | | |
Sbjct 281787 ATTTTGCTTGTTTAATGTTTTCTTATAT---TGTTCAAAAACCATCAAAAGAGCGAGTAA 281843
Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390
||||||| || || ||||| || || ||||| |||||| | || || || ||||
Sbjct 281844 CAGATATAATTCGCGATGCAGTTAAAATTGAACAGGAATTTTTAACTGATGCTTTGCCTG 281903
Query 44391 TAAATTTAATAGGAATGAAT---GAACTTTTGATGAACCAATATATTGAATACATTGCAG 44447
||| |||| || |||||| ||| ||||| || ||||| |||| | || |
Sbjct 281904 TAAGCCTAATTGGTATGAATTGCAAAC---TGATGTCTCAGTATATCGAATTTGTAGCTG 281960
Query 44448 ATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATT 44507
| ||| | | | || ||||||| ||||| |||| ||| | || |||||||| |
Sbjct 281961 ACCGTCTTTTAGTAGAGTTGGGTTGTGATAAGATTTATAATGTTAAGAATCCGTTTGACT 282020
Query 44508 TTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAAT 44567
||||| | || ||||| || ||||| ||||| || |||||||| || || ||||
Sbjct 282021 TTATGAACAAAATTTCCACTGATGGCAAGACAAATTTCTTTGAAAAGAAAGTAGGTGAAT 282080
Query 44568 ATCA 44571
||||
Sbjct 282081 ATCA 282084
>seq169
Length=813669
Score = 159 bits (176), Expect = 3e-34
Identities = 341/507 (67%), Gaps = 2/507 (0%)
Strand=Plus/Minus
Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751
||||| ||||| || ||||||| | ||||||| ||| | | |||||| | | |||
Sbjct 304800 TTTCCTTTGCTTACAACAAAAAGGGTATTTTGGAGAGGAGTGGTTGAAGAATTACTGTGG 304741
Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811
||||| || ||| | || ||| | || | || |||| | || || ||||||||| ||
Sbjct 304740 TTTATTAAGGGTAGCACAAATTCAAAAGAGCTAGCAGAGAAAGATGTTCACATTTGGGAT 304681
Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGAT 40871
| | |||||| | | | | | | |||| || |||| ||||| ||||| |||
Sbjct 304680 CCAAATAGTTCTCGAGAGTTTCTAGATGGTTTAGGTTTTAAAGAAAGGGAAGAAGGCGAT 304621
Query 40872 CTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTAC 40931
| || ||||| |||||||| |||| | |||| ||||| || ||||| ||| |
Sbjct 304620 TTGGGACCTGTCTATGGATTCCAGTGGAGACACTTTGGGGCTGAATATAGAGGAATGCAT 304561
Query 40932 TCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCC 40991
|||| || | | |||| || || ||| || | || ||| | ||||| |
Sbjct 304560 GCTGACTACAGTGGTGAAGGCATTGACCAACTAAATAATGTAATAAAAGACATTAAGGAC 304501
Query 40992 GATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATG 41051
|||| | || || | || || |||| || |||||||| | ||| ||| ||| |||
Sbjct 304500 AATCCAAACAGTCGTAGGATTATTATGTGTGCCTGGAACCCTATTGACATACCTTTAATG 304441
Query 41052 GCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATG 41110
|| | || ||||| || | | ||| ||||| | ||| ||||| ||||| || ||
Sbjct 304440 GCTCTACCTCCTTGCCACTGCCT-TGTGCAGTTCTTTGTTGCAAATGGAGAACTTTCCTG 304382
Query 41111 TCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170
| ||||||||||||||| ||| ||||| || || || || || || || || |||||
Sbjct 304381 CTTACTGTATCAAAGATCAGCTGATATGGGTCTTGGAGTGCCATTCAATATTGCCAGTTA 304322
Query 41171 TGCTCTGCTCACGTATATGATTGCACA 41197
||| | || || |||||| || ||
Sbjct 304321 TGCATTACTGACTGTTATGATAGCTCA 304295
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 41206 ATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACA 41265
|||| | ||||| |||||| ||||||||||||||||| | ||| |||| | || || |
Sbjct 304224 ATTTTCAGCCTGGAGAATTTATTCACACGTTAGGAGATAGCCATGTTTATCTAAACCATA 304165
Query 41266 TAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTA 41325
|| ||| ||| | ||||||||| | ||||||||||| || || ||| |||||
Sbjct 304164 TAACGCCTTTACAACAACAACTGAAGAGGAAACCTAGACCGTTCCCGTGTCTATATATTA 304105
Query 41326 AACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACA 41385
|| | | || || || || || ||| | || || |||| | | | ||| |
Sbjct 304104 AAAGAGAGATTTCGAAAATAGAAGACTTTATATTTGAAGACTTTGAATTGAGGGGTTATA 304045
Query 41386 ATCCGTACCCTAAAATCCACATG 41408
| || ||||| |||||| | |||
Sbjct 304044 AACCTTACCCAAAAATCGATATG 304022
>seq296
Length=775295
Score = 149 bits (164), Expect = 5e-31
Identities = 369/548 (67%), Gaps = 18/548 (3%)
Strand=Plus/Plus
Query 40749 TGGTTTATCAAAGGTTGTACTAATGCTAA-GAAATT---ATCAGAAAGAGGAGTGCACAT 40804
||||| || ||||| | || ||||| || ||| || | |||||| || | ||
Sbjct 25461 TGGTTAATAAAAGGAAGCACAAATGCCAAAGAACTTTCTACCAGAAAC----GTAAAAAT 25516
Query 40805 TTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGA 40864
||| ||| ||||||| | |||||| ||| || || || || | || ||
Sbjct 25517 ATGGGATGTCAACAGTTCGAGGGAGTATTTGGATAGAATGGGGTTTGGGGACCGAGAAGA 25576
Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT-GACA 40923
|| || | ||||| | ||||| ||||||| ||| ||||||||||| | ||| ||
Sbjct 25577 GGGAGACTTGGGTCCGATATATGGGTTTCAGTGGCGTCATTTTGGAGCTGAGTATAGAGG 25636
Query 40924 CTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC-GTTATAGATACG 40982
| ||| | |||| | ||| ||||||| |||||||| ||| || || ||||
Sbjct 25637 C-ATGCGAGCCAATTACGCGAATGAAGGAATCGATCAATTG-AGTCAAGTGATTAATACA 25694
Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042
|| ||| |||| || || | ||||| || || ||||||| || |||| ||
Sbjct 25695 ATCAAAAATTATCCGAATGATAGAAGGATAATCTTATGTTCGTGGAATCCTGTGGACATA 25754
Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGA 41101
| ||||| | ||||| ||||||| || || || |||| ||| |||| ||
Sbjct 25755 CCACAAATGGCTCTTCCACCCTGTCATT-GTCTCGTACAATTTTTCGTAAATAATGACGA 25813
Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161
| |||| | || || |||||||| | || |||||||| ||||| ||||| |||||
Sbjct 25814 ATTGTCTTCGTTGTTATACCAAAGATCGGCCGATATGGGACTGGGGGTACCGTTCAACAT 25873
Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGA 41221
|||||||| ||||| || ||| ||||| || || || ||| ||||||||| | ||
Sbjct 25874 TGCGAGTTACGCTCTCCTAACGGTCATGATAGCTCATGTGACCGGTTTAAAACCCAGCGA 25933
Query 41222 ATTTGTTCACACGTTAGGAGATGG--ACATATTTACATTAATCACATAGAGCCGTTAACA 41279
|||| | |||||| | || || | |||||||| | ||||||||||| | || | |
Sbjct 25934 ATTTATACACACGATTGGCGACAGTCACATATTTCAA--AATCACATAGAAGCTTTGAAA 25991
Query 41280 GAACAACT 41287
|| || ||
Sbjct 25992 GACCAGCT 25999
>seq301
Length=321246
Score = 116 bits (128), Expect = 3e-21
Identities = 147/201 (73%), Gaps = 6/201 (3%)
Strand=Plus/Minus
Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389
|||||||||||||| || | ||||| ||||| || || ||| ||| ||||| |||
Sbjct 213616 GGATGTAAACATGTAAAAGGTATATTGCTGTATGGTCCTCCTGGTACTGGTAAAACTTTA 213557
Query 19390 ATTGCGAGAGAACTTAGTAAATTACT---TACAAAACAACCTCCCAAAATTGTAAATGGT 19446
|| || | || || ||||| | || | | | | || || |||||||| ||||||
Sbjct 213556 ATGGCTCGTCAAATTGGTAAAATGCTGAATGCCAGAGAA---CCAAAAATTGTTAATGGT 213500
Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506
||| |||| | | || ||||| ||| |||| |||| |||||| ||| | || ||||||
Sbjct 213499 CCTCAAATTCTTGACAAGTATGTTGGTGAATCAGAAGCAAATGTTCGAAGATTATTTGCT 213440
Query 19507 GACGCTGAAGAAGAACAAAAA 19527
|| || ||||||||| |||||
Sbjct 213439 GAAGCAGAAGAAGAAGAAAAA 213419
Score = 102 bits (112), Expect = 6e-17
Identities = 114/153 (75%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608
|| ||||| |||||| | |||||| | || || || || || || |||||||| | || |
Sbjct 213345 TTACACATCATAATATTTGATGAAATTGATGCTATTTGCAAACAGAGAGGTTCAGTTGCA 213286
Query 19609 ------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662
| ||| || ||||| || || || |||||||| || ||||| | || |||||
Sbjct 213285 GGAAATACTGGTGTTCATGATACAGTCGTTAATCAACTTCTTGCAAAAATTGATGGTGTG 213226
Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATG 19695
| |||||||||||||||||||| ||||| |||
Sbjct 213225 GAACAACTGAATAATATTTTAGTCATTGGTATG 213193
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397436682147940
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |