Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq12 338 5e-88 seq169 159 3e-34 seq296 149 5e-31 seq301 116 3e-21 >seq12 Length=2314596 Score = 338 bits (374), Expect = 5e-88 Identities = 623/904 (69%), Gaps = 16/904 (2%) Strand=Plus/Plus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 ||||||| ||||||||| ||||| || | ||||| |||||||||| ||||| ||| Sbjct 281189 TTGCTTAGAGAAAATCCAAGAAGGTTCGTAATATTTCCTATTCAATATCCAGACATTTGG 281248 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 ||| |||||| |||| | || || || |||||| |||||||||| || | |||| Sbjct 281249 GAAAAGTACAAGGAAGCTGAAGCTTCCTTCTGGACAACAGAAGAAGTAGACCTTTCTAAG 281308 Query 43796 GACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTG 43855 ||| | || || ||| | || | | |||| ||||| || || || | Sbjct 281309 GACCTTGCCCACTGGGATAAGTTGTCAAATGATGAAAGGCATTTCATTTCACATGTACTT 281368 Query 43856 GCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCG-CA 43914 || ||||||||||| || || || || |||||||| | || || | || | || Sbjct 281369 GCCTTTTTTGCTGCATCTGATGGAATTGTAAATGAAAACCTTGT-AGAGAGATTCAGTCA 281427 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 |||||| ||| || | || || || || |||||||| || ||||||||||| |||||||| Sbjct 281428 AGAAGTACAAGTAACTGAGGCTCGTTGCTTTTATGGTTTCCAAATTGCCATTGAAAATAT 281487 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAA-GC 44033 ||||| |||||||| ||| ||| || || || || || || | ||||| | Sbjct 281488 CCATTCAGAAATGTATAGTACTCTCATTGACACTTATATATTTGACCCAGAAGAGAAAGA 281547 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCC 44093 || || || ||||| || ||||| | ||| |||| | || || || ||||| | Sbjct 281548 ATTTCTT-TTCAATGCTATTGAAACCATGCCTTGTGTTAAGAAGAAGGCTGATTGGGCTC 281606 Query 44094 TTAAATGGATAA--ATTCA-AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTG 44150 || | ||||| | | | | |||| | || ||||||| |||| || ||||||| || Sbjct 281607 TTCATTGGATCAGCAGTAAGAATGCAACATTCCCAGAACGAGTTGTTGCATTTGCAGCTG 281666 Query 44151 TGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTT 44210 ||||||| ||||||||||||||| ||||| || || |||||| | |||||||| ||| Sbjct 281667 TGGAAGGAATTTTCTTTTCAGGAAGTTTTGCTGCTATCTTTTGGCTCAAGAAACGGGGTC 281726 Query 44211 TGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCG 44270 | ||||| || |||| ||||| |||||| | || ||| |||||||| || ||||| | Sbjct 281727 TTATGCCAGGACTGACATTTTCTAATGAGCTTATTTCTCGCGATGAAGGTTTGCATTGTG 281786 Query 44271 ATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTA 44330 |||||||||| || | || ||| | | | || || ||| || | | | Sbjct 281787 ATTTTGCTTGTTTAATGTTTTCTTATAT---TGTTCAAAAACCATCAAAAGAGCGAGTAA 281843 Query 44331 CAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTG 44390 ||||||| || || ||||| || || ||||| |||||| | || || || |||| Sbjct 281844 CAGATATAATTCGCGATGCAGTTAAAATTGAACAGGAATTTTTAACTGATGCTTTGCCTG 281903 Query 44391 TAAATTTAATAGGAATGAAT---GAACTTTTGATGAACCAATATATTGAATACATTGCAG 44447 ||| |||| || |||||| ||| ||||| || ||||| |||| | || | Sbjct 281904 TAAGCCTAATTGGTATGAATTGCAAAC---TGATGTCTCAGTATATCGAATTTGTAGCTG 281960 Query 44448 ATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATT 44507 | ||| | | | || ||||||| ||||| |||| ||| | || |||||||| | Sbjct 281961 ACCGTCTTTTAGTAGAGTTGGGTTGTGATAAGATTTATAATGTTAAGAATCCGTTTGACT 282020 Query 44508 TTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAAT 44567 ||||| | || ||||| || ||||| ||||| || |||||||| || || |||| Sbjct 282021 TTATGAACAAAATTTCCACTGATGGCAAGACAAATTTCTTTGAAAAGAAAGTAGGTGAAT 282080 Query 44568 ATCA 44571 |||| Sbjct 282081 ATCA 282084 >seq169 Length=813669 Score = 159 bits (176), Expect = 3e-34 Identities = 341/507 (67%), Gaps = 2/507 (0%) Strand=Plus/Minus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| ||||| || ||||||| | ||||||| ||| | | |||||| | | ||| Sbjct 304800 TTTCCTTTGCTTACAACAAAAAGGGTATTTTGGAGAGGAGTGGTTGAAGAATTACTGTGG 304741 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAAT 40811 ||||| || ||| | || ||| | || | || |||| | || || ||||||||| || Sbjct 304740 TTTATTAAGGGTAGCACAAATTCAAAAGAGCTAGCAGAGAAAGATGTTCACATTTGGGAT 304681 Query 40812 GCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGAT 40871 | | |||||| | | | | | | |||| || |||| ||||| ||||| ||| Sbjct 304680 CCAAATAGTTCTCGAGAGTTTCTAGATGGTTTAGGTTTTAAAGAAAGGGAAGAAGGCGAT 304621 Query 40872 CTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTAC 40931 | || ||||| |||||||| |||| | |||| ||||| || ||||| ||| | Sbjct 304620 TTGGGACCTGTCTATGGATTCCAGTGGAGACACTTTGGGGCTGAATATAGAGGAATGCAT 304561 Query 40932 TCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTAAATCC 40991 |||| || | | |||| || || ||| || | || ||| | ||||| | Sbjct 304560 GCTGACTACAGTGGTGAAGGCATTGACCAACTAAATAATGTAATAAAAGACATTAAGGAC 304501 Query 40992 GATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATG 41051 |||| | || || | || || |||| || |||||||| | ||| ||| ||| ||| Sbjct 304500 AATCCAAACAGTCGTAGGATTATTATGTGTGCCTGGAACCCTATTGACATACCTTTAATG 304441 Query 41052 GCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGAACTGTCATG 41110 || | || ||||| || | | ||| ||||| | ||| ||||| ||||| || || Sbjct 304440 GCTCTACCTCCTTGCCACTGCCT-TGTGCAGTTCTTTGTTGCAAATGGAGAACTTTCCTG 304382 Query 41111 TCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTA 41170 | ||||||||||||||| ||| ||||| || || || || || || || || ||||| Sbjct 304381 CTTACTGTATCAAAGATCAGCTGATATGGGTCTTGGAGTGCCATTCAATATTGCCAGTTA 304322 Query 41171 TGCTCTGCTCACGTATATGATTGCACA 41197 ||| | || || |||||| || || Sbjct 304321 TGCATTACTGACTGTTATGATAGCTCA 304295 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 41206 ATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACA 41265 |||| | ||||| |||||| ||||||||||||||||| | ||| |||| | || || | Sbjct 304224 ATTTTCAGCCTGGAGAATTTATTCACACGTTAGGAGATAGCCATGTTTATCTAAACCATA 304165 Query 41266 TAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTA 41325 || ||| ||| | ||||||||| | ||||||||||| || || ||| ||||| Sbjct 304164 TAACGCCTTTACAACAACAACTGAAGAGGAAACCTAGACCGTTCCCGTGTCTATATATTA 304105 Query 41326 AACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACA 41385 || | | || || || || || ||| | || || |||| | | | ||| | Sbjct 304104 AAAGAGAGATTTCGAAAATAGAAGACTTTATATTTGAAGACTTTGAATTGAGGGGTTATA 304045 Query 41386 ATCCGTACCCTAAAATCCACATG 41408 | || ||||| |||||| | ||| Sbjct 304044 AACCTTACCCAAAAATCGATATG 304022 >seq296 Length=775295 Score = 149 bits (164), Expect = 5e-31 Identities = 369/548 (67%), Gaps = 18/548 (3%) Strand=Plus/Plus Query 40749 TGGTTTATCAAAGGTTGTACTAATGCTAA-GAAATT---ATCAGAAAGAGGAGTGCACAT 40804 ||||| || ||||| | || ||||| || ||| || | |||||| || | || Sbjct 25461 TGGTTAATAAAAGGAAGCACAAATGCCAAAGAACTTTCTACCAGAAAC----GTAAAAAT 25516 Query 40805 TTGGAATGCGCACAGTTCTAAAACATATTTGTCTAGCATAGGATTACAAGATAGGGATGA 40864 ||| ||| ||||||| | |||||| ||| || || || || | || || Sbjct 25517 ATGGGATGTCAACAGTTCGAGGGAGTATTTGGATAGAATGGGGTTTGGGGACCGAGAAGA 25576 Query 40865 AGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT-GACA 40923 || || | ||||| | ||||| ||||||| ||| ||||||||||| | ||| || Sbjct 25577 GGGAGACTTGGGTCCGATATATGGGTTTCAGTGGCGTCATTTTGGAGCTGAGTATAGAGG 25636 Query 40924 CTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGC-GTTATAGATACG 40982 | ||| | |||| | ||| ||||||| |||||||| ||| || || |||| Sbjct 25637 C-ATGCGAGCCAATTACGCGAATGAAGGAATCGATCAATTG-AGTCAAGTGATTAATACA 25694 Query 40983 ATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTA 41042 || ||| |||| || || | ||||| || || ||||||| || |||| || Sbjct 25695 ATCAAAAATTATCCGAATGATAGAAGGATAATCTTATGTTCGTGGAATCCTGTGGACATA 25754 Query 41043 CATTTGATGGCATTGCCACCTTGTCATTTGTTATGT-CAGTTTTACGTTTGCAATGGTGA 41101 | ||||| | ||||| ||||||| || || || |||| ||| |||| || Sbjct 25755 CCACAAATGGCTCTTCCACCCTGTCATT-GTCTCGTACAATTTTTCGTAAATAATGACGA 25813 Query 41102 ACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACAT 41161 | |||| | || || |||||||| | || |||||||| ||||| ||||| ||||| Sbjct 25814 ATTGTCTTCGTTGTTATACCAAAGATCGGCCGATATGGGACTGGGGGTACCGTTCAACAT 25873 Query 41162 AGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGA 41221 |||||||| ||||| || ||| ||||| || || || ||| ||||||||| | || Sbjct 25874 TGCGAGTTACGCTCTCCTAACGGTCATGATAGCTCATGTGACCGGTTTAAAACCCAGCGA 25933 Query 41222 ATTTGTTCACACGTTAGGAGATGG--ACATATTTACATTAATCACATAGAGCCGTTAACA 41279 |||| | |||||| | || || | |||||||| | ||||||||||| | || | | Sbjct 25934 ATTTATACACACGATTGGCGACAGTCACATATTTCAA--AATCACATAGAAGCTTTGAAA 25991 Query 41280 GAACAACT 41287 || || || Sbjct 25992 GACCAGCT 25999 >seq301 Length=321246 Score = 116 bits (128), Expect = 3e-21 Identities = 147/201 (73%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 19330 GGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTA 19389 |||||||||||||| || | ||||| ||||| || || ||| ||| ||||| ||| Sbjct 213616 GGATGTAAACATGTAAAAGGTATATTGCTGTATGGTCCTCCTGGTACTGGTAAAACTTTA 213557 Query 19390 ATTGCGAGAGAACTTAGTAAATTACT---TACAAAACAACCTCCCAAAATTGTAAATGGT 19446 || || | || || ||||| | || | | | | || || |||||||| |||||| Sbjct 213556 ATGGCTCGTCAAATTGGTAAAATGCTGAATGCCAGAGAA---CCAAAAATTGTTAATGGT 213500 Query 19447 CCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCT 19506 ||| |||| | | || ||||| ||| |||| |||| |||||| ||| | || |||||| Sbjct 213499 CCTCAAATTCTTGACAAGTATGTTGGTGAATCAGAAGCAAATGTTCGAAGATTATTTGCT 213440 Query 19507 GACGCTGAAGAAGAACAAAAA 19527 || || ||||||||| ||||| Sbjct 213439 GAAGCAGAAGAAGAAGAAAAA 213419 Score = 102 bits (112), Expect = 6e-17 Identities = 114/153 (75%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTGTA 19608 || ||||| |||||| | |||||| | || || || || || || |||||||| | || | Sbjct 213345 TTACACATCATAATATTTGATGAAATTGATGCTATTTGCAAACAGAGAGGTTCAGTTGCA 213286 Query 19609 ------AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | ||| || ||||| || || || |||||||| || ||||| | || ||||| Sbjct 213285 GGAAATACTGGTGTTCATGATACAGTCGTTAATCAACTTCTTGCAAAAATTGATGGTGTG 213226 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATG 19695 | |||||||||||||||||||| ||||| ||| Sbjct 213225 GAACAACTGAATAATATTTTAGTCATTGGTATG 213193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397436682147940