Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq310 282 4e-71 seq218 127 2e-24 seq25 107 2e-18 >seq310 Length=366558 Score = 282 bits (312), Expect = 4e-71 Identities = 959/1465 (65%), Gaps = 52/1465 (4%) Strand=Plus/Plus Query 130805 GTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATG 130864 ||| | ||||| | ||||| || || || || ||||| ||||| | ||||| ||||| Sbjct 100908 GTGTATGGTTCTACAGATTCATTATTACCCAAAATTTGGGCTGTTGAAGCGGTAGGCATT 100967 Query 130865 TATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTT-CAATTCATC 130923 || | | || ||||| | || ||||| | | | ||||| ||||| ||| || | Sbjct 100968 GGGGCAAGAAGTAATGAATTTCTAATACCGTACTTAGCAATTTT-CGCTTTCAAAGCACC 101026 Query 130924 CCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTT 130983 ||||||||| | || || | || |||||||||||| | |||| || || || Sbjct 101027 CCAATCCCACAAGTCTGTGGGAGTT---TTATTCCACATATCATACTGTAAAATCCCCTT 101083 Query 130984 ACTGGCGGGACTGGATTCGAACG----ATTCGTAGATTCCTTCGACACGAGCCAGGTCGT 131039 || | ||||| ||| | | || | | || ||| ||| || Sbjct 101084 GCTTACAGGACTACCTTCATAAGTGGAATAAGGACCATCTTTCTCTGCGATT----TCAC 101139 Query 131040 TGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCG 131099 ||| ||||| | || |||||||| | |||||| |||||||| ||| | |||||| Sbjct 101140 AGCTTGCTTCAAGTGCACCGTAATACAAAGTTTCGAAAATTTGTTGATTAA---GTTTCG 101196 Query 131100 C---TTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTA 131156 | || ||| || |||| | | |||||||||||| || || | ||| |||| Sbjct 101197 CAGCTTCAGGGCTGTCATAAGCTATACGAAGTAAAATAAAAGCATCGGCTAAACCTTGTA 101256 Query 131157 TCCCAACGCCCACCGGTCTATGTTTTAAATTACA--TTTACGCGAACATTCGGT--GGGA 131212 || | || | |||||| || | | ||| | ||| || | ||| |||| Sbjct 101257 CACCGATTCCAATCGGTCTGTGCCTCACATTTGAGGTTTTGGCC----TCTGGTACGGGA 101312 Query 131213 TAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTC 131272 ||| |||| ||| || |||||||||| || | |||| || |||| ||| Sbjct 101313 TAATAATTAACGTCGATAATTTTGTTTAGGTTTTTCGTAACAACTTTGGTGATTTCTTTT 101372 Query 131273 AATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGAC 131332 || || | ||||| | | | ||| | ||||||| ||| || | || Sbjct 101373 AACTTCTTAAAATCGTAGGATTTTCTATCGGGCGTTACAAACATATTCACTGCAAGCGAT 101432 Query 131333 GCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAA 131392 |||| |||||| || || ||||||| ||| | ||||||||| | ||| ||| Sbjct 101433 GCCAAATTACAGACCGCAACTTCGTCAGGGGAAGTATATTCAACAATTTCTGTGCATAAA 101492 Query 131393 TTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTT 131451 || ||||| | || || || || ||||||||||||||||| || |||| || || Sbjct 101493 TTGCTGCTTCTAATTGTTCCTAAGTTTTGTTGATTGCTTTTTCTGTTG-CATGCATCTTT 101551 Query 131452 GTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAAT-GTATCGAAAGAGTT 131510 || | |||| | || || || ||||||||||||| |||| || | || | | | || Sbjct 101552 ATATAGCATGAAAGGAGTCCCAGTTTCGACTTGAGAAACAATTATAGCAT-GCCACAATT 101610 Query 131511 TTCGAGCAGACAATTGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTT 131570 | |||||| | |||| | |||||| || | ||| || ||||| |||||| || Sbjct 101611 TCTGAGCAGGTACTTGAGAAATGTATTTACCTTCTGCTTCATACTTTTCATACAACTGTT 101670 Query 131571 CAAAGTTTTGGCCAAACGAACTGTCC-AAATT--GGGACATTCGCTG-GGACACATTAGC 131626 |||| |||| || | || | || ||| | |||||||| | || |||||||| || Sbjct 101671 CAAACTTTTCTCC---CCAATTATCGTAAAGTCCGGGACATT-GATGAGGACACATCAGT 101726 Query 131627 GACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTAC 131686 ||||| || || |||||||||| |||||||||||||| || | ||||| || || Sbjct 101727 GACCAGTGCCCATTTTGTTCAACTCTTTTCATAAACAAATCTGGTATCCATAGGGCATAA 101786 Query 131687 AACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCC 131746 |||| |||||| ||| | |||||||| | || || ||||||||||||||||||| || Sbjct 101787 AACAAATCTCTTGCTCTCATCTCTTCTTTTCCTGTATTTTTTTTCAAATTTAAAAATTCA 101846 Query 131747 AAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCC---TTTGCGCTTACCG 131803 || ||||| |||||||| ||||| | ||| | || | || || | | ||||| Sbjct 101847 AATATGTCTGCATGCCATGGTTCAAGATAGATAGCAAAAGCACCAGGTCTCTTGTTACCT 101906 Query 131804 CCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTG 131863 ||||||| |||| | | | || || | || || | ||| || | |||||||| Sbjct 101907 CCTTGATCTACATATCTGGCTAAATTATTAAAAACACGAAGCATAGGAACTAAACCGTTC 101966 Query 131864 GCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGT 131923 | | || ||||||| ||| | || || || || | || ||||| ||| | | Sbjct 101967 GAAGTGCCGTTGGTGCCTGCTATGAAACTACCTTTAGCACGTATATTGTGCACGCTTATG 102026 Query 131924 CCAATACCTCC-GCCGTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACC 131982 || | ||| || |||| ||||||| || || || | | | || | | ||| | || || Sbjct 102027 CCCAAACCACCTGCCG-ATTTAGAAATGAGAGCACTTGTAGTCAAACATTTACAAATGCC 102085 Query 131983 TTCCACGCTGTCCGC-GGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAAT- 132040 ||| | ||| || | |||| || | || || || || || || | ||| ||| | Sbjct 102086 TTCAATGCTATCATCAGGCATTG-CTACCAAGAAACACGATGAAAGCTG-AGGTCTTGTG 102143 Query 132041 GTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGA 132100 || || ||||| |||| || || || || ||||| |||| | | | ||| | Sbjct 102144 GTCCCAGCTGAGAACAGAGTAGGACTTGCATGTGTGAAAAATCGATCTGACATTAAATTG 102203 Query 132101 TACGATTGTATAGCGGACTCGATATCGCCCAGATGTATGGTCAATGCGACCCGCATGTAC 132160 |||| || ||| |||| || ||||| || ||| || || || ||||| | Sbjct 102204 TACGTTTCTATTGCGGCATCTATATCTTTATAGTGAATGCCCACAGCAACTCGCATAAGC 102263 Query 132161 ATGTGTTGAATGCGCTCGGCCGTTTTGCCGTCGATTTTGATCAAATA--ACCGTTTTCCA 132218 ||||||||| | ||| | |||| |||| || ||| | | ||| | || ||| | Sbjct 102264 ATGTGTTGAGGTCTTTCGACGATTTTTCCGTTGACTTTCAAGAGATACGAACG--TTCTA 102321 Query 132219 AAGTTTTGAAACCAAAATATTTGTA 132243 ||||||| ||||||||||| ||||| Sbjct 102322 AAGTTTTAAAACCAAAATAATTGTA 102346 >seq218 Length=661058 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || || | || ||||||||||||||| ||||| || || |||||||| || || Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| | |||||| ||||| |||| ||||| |||||||| || || Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 | ||| || || || || ||| ||| | | |||||| || || | |||| || || Sbjct 356118 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGC-TCTAC 356176 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 ||| || ||||||| ||| || || | ||||| || |||||||||||| Sbjct 356177 TTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCATA 356225 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 ||||| || ||||| | || || |||||||||||||||||||| | | |||| | Sbjct 356238 CGCAAAACTAAATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGACCA 356297 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||| || || || |||| ||||| ||||| || || || | ||| || || Sbjct 356298 TCTTCTAACTGCTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCCTTG 356357 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTAT 27211 || || || ||| | | |||| | || || | |||| |||||||||||||| || Sbjct 356358 TCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCAGATGGC-TCAACTTCTAGAGTGAT 356416 Query 27212 AGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || ||||| || |||||||| ||||| Sbjct 356417 GGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 356452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 || || |||||||| | ||| ||||| ||||| ||||| || || | | | Sbjct 352166 CGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCA 352225 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| | ||||||||||| |||| | ||| || || || || || | ||| ||||| Sbjct 352226 TCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTG 352285 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | |||| | ||||||| | ||| ||||| || || || Sbjct 352286 TCCTGGATCTTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATG 352345 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || | ||||| ||||| |||||||| Sbjct 352346 GTTTTTCCAGTTAACGTTTTAACAAAAATTTGCAT 352380 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| | | ||||||||| | || || |||||||||||||| || ||| Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAG 356513 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | ||||| || ||||| || || | || | | ||| ||||| || || Sbjct 356514 AGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGA 356573 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || || || ||| | | || | || |||| | ||||||| Sbjct 356574 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACT 356633 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 |||| ||| || | ||| || || || || ||||| || ||||||||| || || Sbjct 356634 TCTAAAGTGATCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCATACCTCCT 356687 >seq25 Length=1883024 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 1512025 CCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAA 1512084 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| | || ||||| ||| |||| | | ||||||||| || || Sbjct 1512085 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGA 1512144 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || ||||| || | |||| | ||||||| || |||||| Sbjct 1512145 ATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACC 1512204 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || | ||| || || |||||||||||||| |||||||| |||||| Sbjct 1512205 TCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCAT-GCTGCT 1512257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424913746594656