Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq218 208 9e-49 seq25 134 2e-26 seq428 131 2e-25 seq12 95.1 1e-14 >seq218 Length=661058 Score = 208 bits (230), Expect = 9e-49 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || ||||| || ||||| || |||||| || Sbjct 356453 AATGCAGATCTTTGTAAAGACTCTTACTGGAAAGACCATCACTCTAGAAGTTGAGCCATC 356394 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| | || ||||||||||| |||||||| || |||||||||||||| Sbjct 356393 TGATACAATTGAAAACGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCA 356334 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||||||||||||||||| ||||| | || |||| ||| ||||| | ||||| || Sbjct 356333 ACAACGTCTAATTTTTGCTGGGAAGCAGTTAGAAGATGGTCGCACCCTTTCTGACTACAA 356274 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||| ||||| ||| |||| |||||||| | ||||| Sbjct 356273 TATTCAAAAAGAATCGACTCTGCATTTAGTTTTGCGTCTCAGAGGTGG 356226 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| ||||| || | || || || ||||| || ||||| || ||| || | Sbjct 356224 ATGCAAATCTTCGTCAAAACATTAACTGGTAAAACTATAACCCTTGAAGTAGAGCCATCT 356165 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || |||||||| |||||||| || || || ||||| || Sbjct 356164 GATACAATAGAAAACGTCAAAGCCAAAATTCAAGACAAGGAAGGTATCCCACCAGATCAA 356105 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| |||||||| || || || | || |||| || ||||| |||| |||||| Sbjct 356104 CAACGTCTTATTTTTGCCGGGAAACAGTTGGAAGATGGACGAACCCTTTCAGATTATAAT 356045 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || | ||| | || ||| | ||||| ||||| Sbjct 356044 ATTCAGAAGGAATCTACATTACATTTGGTATTGAGGCTTCGAGGTGG 355998 Score = 143 bits (158), Expect = 3e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || || || || || || ||| | || ||||| || Sbjct 356680 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCA 356621 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | || || |||||||| ||||| || || ||||| ||||| ||| Sbjct 356620 GATACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 356561 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | |||| ||||| || || ||||| || |||| ||||||||| | || |||||| Sbjct 356560 CAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAAT 356501 Query 27586 GTCCAAAAGGAATCCACTCTTCAT 27609 | ||||| ||||||||||| ||| Sbjct 356500 ATTCAAAAAGAATCCACTCTCCAT 356477 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| ||||| || || || || || || || |||||||| || | Sbjct 356909 AATGCAGATTTTTGTTAAGACACTAACTGGTAAAACAATCACCCTTGAGGTAGAACCGTC 356850 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | || | |||||||||||||| || || ||||| ||||| |||||||| Sbjct 356849 TGACACAATAGAGAACGTAAAGGCTAAAATTCAAGATAAAGAGGGTATTCCACCAGACCA 356790 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | ||||||||||||| ||||| || || |||| | | || | | || || || Sbjct 356789 ACAAAGATTAATTTTTGCTGGCAAGCAGCTTGAAGATGGTAGGACATTGTCTGATTACAA 356730 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| |||||| |||| ||||||||| | || || Sbjct 356729 CATCCAGAAAGAATCCACCCTTCATTTAGTTTTGCGTCTTAGAGGAGG 356682 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || ||| | || || || || || || || || || || || Sbjct 352380 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 352321 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| |||||||||| || |||||||| || || ||||||||||||||| Sbjct 352320 GACACAATTGAAAACGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAG 352261 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | |||||||| ||||| ||| | || |||| | | || | | || || || Sbjct 352260 CAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAAC 352201 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || || || || ||| | || || |||||| | |||||| Sbjct 352200 ATTCAGAAAGAGAGTACCCTCCATTTGGTTTTACGTCTTAGAGGTGGA 352153 Score = 109 bits (120), Expect = 6e-19 Identities = 157/220 (71%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 27416 TTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCAGGTGATAGCA 27472 |||| ||||| || || || || || || || || || || || ||||| | | | Sbjct 357451 TTGTTAAGACACTAACTGGTAAAACAATCACACTGGAAGTAGAACCGTCAG---ACACAA 357395 Query 27473 TTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTC 27532 ||| |||| ||||||| || || |||||||| || || |||||||||||||| || ||| Sbjct 357394 TTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAACGTT 357335 Query 27533 TAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAA 27592 | |||||||||||||||||| | || |||| | | || | | || || || | || | Sbjct 357334 TGATTTTTGCTGGTAAGCAATTGGAAGATGGTAGAACATTGTCTGATTACAACATTCAGA 357275 Query 27593 AGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||| | || || |||||||| || || Sbjct 357274 AAGAGAGTACCCTCCATTTGGTTTTACGTCTTCGTGGAGG 357235 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTC 27461 |||||| || ||||| ||||| || || || || || || || || || || || ||| Sbjct 352153 AATGCAGATTTTTGTTAAGACACTAACTGGAAAAACCATCACACTGGAAGTAGAACCGTC 352094 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | | |||| |||| ||||||| || || |||||||| || || ||||||||||| Sbjct 352093 AG---ACACAATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGA 352037 Query 27522 CCAGCAGCGT 27531 ||| || ||| Sbjct 352036 CCAACAACGT 352027 >seq25 Length=1883024 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || |||||||| || || || || ||||||||||| | Sbjct 1512251 ATGCAAATTTTTGTGAAAACTCTTACCGGAAAAACAATCACCCTTGAGGTTGAACCCTCA 1512192 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || ||||| |||||||| || |||||||| || || Sbjct 1512191 GACACAATCGAAAATGTAAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 1512132 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | ||||||| |||||||||||| | || |||| ||||| || | |||||||| Sbjct 1512131 CAGAGGTTAATTTTCGCTGGTAAGCAATTAGAAGATGGCCGTACTCTTTCTGACTATAAC 1512072 Query 27586 GTCCAAAAGGAATCCAC 27602 | || || ||||| || Sbjct 1512071 ATTCAGAAAGAATCGAC 1512055 >seq428 Length=160056 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||| || ||| | ||||| || | Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| ||||||| ||||| || || || || |||||||| || ||||| Sbjct 129504 GATACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAA 129563 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||||||||||||||| || ||| | || |||| ||||| | | || || || Sbjct 129564 CAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAAC 129623 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||||||||||||| || | ||| | ||||| Sbjct 129624 ATCCAAAAGGAATCGACATTGCATTTGGTCTT 129655 >seq12 Length=2314596 Score = 95.1 bits (104), Expect = 1e-14 Identities = 298/449 (66%), Gaps = 31/449 (7%) Strand=Plus/Plus Query 64726 GCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGG--GTCATTCTGTTCTATTTTCTGGC 64783 || ||||| ||||||||||||||||||||| || || | ||| |||| || |||| Sbjct 281654 GCATTTGCAGCTGTGGAAGGAATTTTCTTTTCAGGAAGTTTTGCTG--CTATCTTTTGGC 281711 Query 64784 TAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACG 64843 | || || ||||| || |||||||| ||| | ||||| || ||||| || ||||| || | Sbjct 281712 TCAAGAAACGGGGTCTTATGCCAGGACTGACATTTTCTAATGAGCTTATTTCTCGCGATG 281771 Query 64844 AGGGGCTCCACCAAGAATTTGC--GGTTACCCTGTTC--AGCCACCTCAAGGACAAACCA 64899 | || | || || ||||| | ||| | ||| | |||| |||||| Sbjct 281772 AAGGTTTGCATTGTGATTTTGCTTGTTTAATGTTTTCTTATATTGTTCAA----AAACCA 281827 Query 64900 TCACATGGGACTATAATTGATATAGTAAAATCG----GCTGTAGAAATTGAAAAGGAATT 64955 ||| | | | ||| ||||| || ||| || || |||||||| ||||||| Sbjct 281828 TCAAAAGAGCGAGTAACAGATAT----AATTCGCGATGCAGTTAAAATTGAACAGGAATT 281883 Query 64956 CATTACTGCCGCGCTTCCGTGT-CGTCTCATCGGCATGGATGCCGATAAGATGAAACAGT 65014 | |||| || || | ||| | || || || ||| || | | |||| |||| Sbjct 281884 TTTAACTGATGC-TTTGCCTGTAAGCCTAATTGGTATGAATTGCAAACTGATGTCTCAGT 281942 Query 65015 ATATCGAATTTGTAGCAGATCGCCTGCTTACT-CAGTT---TGGTATTAAGCCCTACTGG 65070 |||||||||||||||| || || || ||| | |||| | || |||| || Sbjct 281943 ATATCGAATTTGTAGCTGACCGTCT-TTTAGTAGAGTTGGGTTGTGATAAGATTTA---T 281998 Query 65071 AATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTT 65130 ||| | ||||| ||||||| ||| | | || | || || ||||| || || Sbjct 281999 AATGTTAAGAATCCGTTTGACTTTATGAACAAAATTTCCACTGATGGCAAGACAAATTTC 282058 Query 65131 TTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 |||||||||| |||||||| || ||||| Sbjct 282059 TTTGAAAAGAAAGTAGGTGAATA-TCAAA 282086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570281970026560