Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq218 156 3e-33
seq25 116 2e-21
>seq218
Length=661058
Score = 156 bits (172), Expect = 3e-33
Identities = 176/231 (76%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||||||||| || ||||||||||| || ||||| || |||||||| ||||| ||
Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| |||| | ||||| | ||||||||||||||| || ||||| || ||||| || ||
Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT--TCGCTCTCC 34656
| || || ||||| |||| || | || ||| | |||||||||| | | |||
Sbjct 352274 ATACCTTCTTTGTCCTGGATC-TTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCT-- 352330
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
||||||| || || ||||| || ||||||||||| |||||||| ||||||
Sbjct 352331 ACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCATG 352381
Score = 132 bits (146), Expect = 3e-26
Identities = 170/230 (74%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||| | ||| |||||||| | || ||||| ||||| ||||||||||||
Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| ||||| | ||||| | ||||| |||||||| || | ||| ||||| || || ||
Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC--TTCGCTCTCC 34656
| || ||||||||| ||| ||| | ||| ||| | ||||| || | |||||
Sbjct 356118 ATACCTTCCTTGTCT-TGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCT-- 356174
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||||| | |||||| |||||||| ||||| ||||| || || || |||||
Sbjct 356175 ACTTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224
Score = 123 bits (136), Expect = 2e-23
Identities = 155/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||||||||||||| || |||||||| |||||||| || || || || | |||||
Sbjct 356472 ACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACCATCTTCC 356531
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617
|||||||| || ||||| ||||| | ||| || || || || | || || |||||| ||
Sbjct 356532 AGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCT-TG 356590
Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676
| ||||| |||||| | |||||| ||| || ||||| | || ||||||||
Sbjct 356591 AATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGATCGTTTT 356650
Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
||| || | || ||||| ||||| |||||
Sbjct 356651 ACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680
Score = 120 bits (132), Expect = 2e-22
Identities = 159/218 (73%), Gaps = 2/218 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | |||||| || ||||||||||| || ||||| || |||||||| ||||| ||
Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||||| | ||||| | ||| ||||| ||||| || ||||| |||||||| || ||
Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658
| || || ||||| |||||| || | | |||||||||| || | || ||
Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGT-TCTAC 357413
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAA 34696
||||| || || |||||||| |||| || || ||||
Sbjct 357414 TTCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAACAA 357451
Score = 114 bits (126), Expect = 8e-21
Identities = 166/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||||||||||||| || ||||| || ||| || || || ||||| ||||| ||
Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
| ||| | | |||||||| || || || ||||| ||||| | |||||||| || ||
Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657
| ||||| || ||| ||| ||| | || ||| | |||||||| || | || |
Sbjct 356802 ATACCCTCTTTATCT-TGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGT-TCTA 356859
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
| || | ||| || |||||||| |||| || || ||||||||||||||
Sbjct 356860 CCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908
>seq25
Length=1883024
Score = 116 bits (128), Expect = 2e-21
Identities = 166/234 (71%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| ||||| | ||| |||||||| || | || || || ||||||||||| || |||
Sbjct 1512025 CCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAA 1512084
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | ||||| | ||| ||||| || || ||||| | |||||| || || ||
Sbjct 1512085 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGA 1512144
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659
| || ||||||||| ||||| |||| | ||||||||| | || ||
Sbjct 1512145 ATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACC 1512204
Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713
|| | ||| || ||||| ||||| | |||||||||||||| |||||| || ||
Sbjct 1512205 TCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCATGCTGCTT 1512258
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314714302961204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |