Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq218 156 3e-33 seq25 116 2e-21 >seq218 Length=661058 Score = 156 bits (172), Expect = 3e-33 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||||||||| || ||||||||||| || ||||| || |||||||| ||||| || Sbjct 352154 CCACCTCTAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 352213 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||||||||||||||| || ||||| || ||||| || || Sbjct 352214 AAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 352273 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT--TCGCTCTCC 34656 | || || ||||| |||| || | || ||| | |||||||||| | | ||| Sbjct 352274 ATACCTTCTTTGTCCTGGATC-TTAGCCTTCACGTTTTCAATTGTGTCTGATGGTTCT-- 352330 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 ||||||| || || ||||| || ||||||||||| |||||||| |||||| Sbjct 352331 ACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATTTGCATG 352381 Score = 132 bits (146), Expect = 3e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | ||| |||||||| | || ||||| ||||| |||||||||||| Sbjct 355998 CCACCTCGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAA 356057 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | ||||| | ||||| |||||||| || | ||| ||||| || || || Sbjct 356058 AGGGTTCGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGG 356117 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTC--TTCGCTCTCC 34656 | || ||||||||| ||| ||| | ||| ||| | ||||| || | ||||| Sbjct 356118 ATACCTTCCTTGTCT-TGAATTTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCT-- 356174 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| | |||||| |||||||| ||||| ||||| || || || ||||| Sbjct 356175 ACTTCAAGGGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 ||||||||||||||| || |||||||| |||||||| || || || || | ||||| Sbjct 356472 ACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACCATCTTCC 356531 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 |||||||| || ||||| ||||| | ||| || || || || | || || |||||| || Sbjct 356532 AGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCT-TG 356590 Query 34618 ATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 | ||||| |||||| | |||||| ||| || ||||| | || |||||||| Sbjct 356591 AATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGATCGTTTT 356650 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||| || | || ||||| ||||| ||||| Sbjct 356651 ACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 120 bits (132), Expect = 2e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | |||||| || ||||||||||| || ||||| || |||||||| ||||| || Sbjct 357235 CCTCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGAC 357294 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||||| | ||||| | ||| ||||| ||||| || ||||| |||||||| || || Sbjct 357295 AATGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGA 357354 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCT-TCGCTCTCCAC 34658 | || || ||||| |||||| || | | |||||||||| || | || || Sbjct 357355 ATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGT-TCTAC 357413 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAA 34696 ||||| || || |||||||| |||| || || |||| Sbjct 357414 TTCCAGTGTGATTGTTTTACCAGTTAGTGTCTTAACAA 357451 Score = 114 bits (126), Expect = 8e-21 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||||||||| || ||||| || ||| || || || ||||| ||||| || Sbjct 356682 CCTCCTCTAAGACGCAAAACTAAATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGAC 356741 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| | | |||||||| || || || ||||| ||||| | |||||||| || || Sbjct 356742 AATGTCCTACCATCTTCAAGCTGCTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGA 356801 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCA 34657 | ||||| || ||| ||| ||| | || ||| | |||||||| || | || | Sbjct 356802 ATACCCTCTTTATCT-TGAATTTTAGCCTTTACGTTCTCTATTGTGTCAGACGGT-TCTA 356859 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || |||||||| |||| || || |||||||||||||| Sbjct 356860 CCTCAAGGGTGATTGTTTTACCAGTTAGTGTCTTAACAAAAATCTGCAT 356908 >seq25 Length=1883024 Score = 116 bits (128), Expect = 2e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | ||| |||||||| || | || || || ||||||||||| || ||| Sbjct 1512025 CCTCCTCTTAAACGTAACACCAAGTGTAAGGTCGATTCTTTCTGAATGTTATAGTCAGAA 1512084 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| | ||| ||||| || || ||||| | |||||| || || || Sbjct 1512085 AGAGTACGGCCATCTTCTAATTGCTTACCAGCGAAAATTAACCTCTGTTGATCAGGAGGA 1512144 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | || ||||||||| ||||| |||| | ||||||||| | || || Sbjct 1512145 ATACCTTCCTTGTCTTGAATCTTCGCCTTTACATTTTCGATTGTGTCTGAGGGTTCAACC 1512204 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATT 34713 || | ||| || ||||| ||||| | |||||||||||||| |||||| || || Sbjct 1512205 TCAAGGGTGATTGTTTTTCCGGTAAGAGTTTTCACAAAAATTTGCATGCTGCTT 1512258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314714302961204