Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq296 107 2e-18
>seq296
Length=775295
Score = 107 bits (118), Expect = 2e-18
Identities = 312/475 (66%), Gaps = 4/475 (1%)
Strand=Plus/Plus
Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315
||||| ||||||||| |||||||||| | | || ||| || |||| || || ||
Sbjct 25440 GGCGTAGTCGAGGAGATGCTGTGGTTAATAAAAGGAAGCACAAATGCCAAAGAACTTTCT 25499
Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG 34375
|| | || || || ||||| | || | || | || | | |||| | ||||
Sbjct 25500 ACCAGAAACGTAAAAATATGGGATGTCAACAGTTCGAGGGAGTATTTGGATAGAATGGGG 25559
Query 34376 TTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTT 34435
|| || || ||||| |||||||| ||| | || ||||| |||||| | || |||
Sbjct 25560 TTTGGGGACCGAGAAGAGGGAGACTTGGGTCCGATATATGGGTTTCAGTGGCGTCATTTT 25619
Query 34436 GGGGCGGAGTATCGGGGGA-GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCA 34494
|| || |||||| | || | |||| || | || || | ||| || || || |
Sbjct 25620 GGAGCTGAGTATAGAGGCATGCGA-GCCAATTACGCGAATGAAGGAATCGATCAATTG-A 25677
Query 34495 GT-ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGT 34553
|| | ||||| | || | || | || |||| |||||||| | | || |||
Sbjct 25678 GTCAAGTGATTAATACAATCAAAAATTATCCGAATGATAGAAGGATAATCTTATGTTCGT 25737
Query 34554 GGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCT 34613
|||| || ||| | || | ||||| || || || || || ||| ||||| |
Sbjct 25738 GGAATCCTGTGGACATACCACAAATGGCTCTTCCACCCTGTCATTGTCTCGTACAATTTT 25797
Query 34614 ACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAG 34673
||| |||| || |||| | | | || ||| |||||| || ||||| | |
Sbjct 25798 TCGTAAATAATGACGAATTGTCTTCGTTGTTATACCAAAGATCGGCCGATATGGGACTGG 25857
Query 34674 GGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728
|||| |||||||||||||| ||||||||||| || ||| |||||| ||||||||
Sbjct 25858 GGGTACCGTTCAACATTGCGAGTTACGCTCTCCTAACGGTCATGATAGCTCATGT 25912
Score = 107 bits (118), Expect = 2e-18
Identities = 312/475 (66%), Gaps = 4/475 (1%)
Strand=Plus/Minus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|||||||| |||||| ||| || ||||||||||| |||||||||||||| ||||| |
Sbjct 25912 ACATGAGCTATCATGACCGTTAGGAGAGCGTAACTCGCAATGTTGAACGGTACCCCCAGT 25853
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736
||||| || |||||| ||| || | | | |||| || |||| ||| | |||
Sbjct 25852 CCCATATCGGCCGATCTTTGGTATAACAACGAAGACAATTCGTCATTATTTACGAAAAAT 25793
Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796
|| ||| || || || || || ||||| | || | ||| || |||||||
Sbjct 25792 TGTACGAGACAATGACAGGGTGGAAGAGCCATTTGTGGTATGTCCACAGGATTCCACGAA 25733
Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGT-ACTGCAG 6855
|| | | |||||||| |||| || | || | || | ||||| | ||| ||
Sbjct 25732 CATAAGATTATCCTTCTATCATTCGGATAATTTTTGATTGTATTAATCACTTGACT-CAA 25674
Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGC-TCCCCCGATACTCCGCCCCAAAGT 6914
|| || ||| | || || | || |||| | || | |||||| || ||||| |
Sbjct 25673 TTGATCGATTCCTTCATTCGCGTAATTGGC-TCGCATGCCTCTATACTCAGCTCCAAAAT 25615
Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974
| | |||||| ||||| || | ||| |||||||| ||||| || || ||||||
Sbjct 25614 GACGCCACTGAAACCCATATATCGGACCCAAGTCTCCCTCTTCTCGGTCCCCAAACCCCA 25555
Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034
| |||| | | || | || | || | ||||| || || || | || || |
Sbjct 25554 TTCTATCCAAATACTCCCTCGAACTGTTGACATCCCATATTTTTACGTTTCTGGTAGAAA 25495
Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCC 7089
| || |||| || ||| || | | |||||||||| ||||||||| |||||
Sbjct 25494 GTTCTTTGGCATTTGTGCTTCCTTTTATTAACCACAGCATCTCCTCGACTACGCC 25440
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448240054119360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |