Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq296 107 2e-18 >seq296 Length=775295 Score = 107 bits (118), Expect = 2e-18 Identities = 312/475 (66%), Gaps = 4/475 (1%) Strand=Plus/Plus Query 34256 GGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCG 34315 ||||| ||||||||| |||||||||| | | || ||| || |||| || || || Sbjct 25440 GGCGTAGTCGAGGAGATGCTGTGGTTAATAAAAGGAAGCACAAATGCCAAAGAACTTTCT 25499 Query 34316 TCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGG 34375 || | || || || ||||| | || | || | || | | |||| | |||| Sbjct 25500 ACCAGAAACGTAAAAATATGGGATGTCAACAGTTCGAGGGAGTATTTGGATAGAATGGGG 25559 Query 34376 TTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTT 34435 || || || ||||| |||||||| ||| | || ||||| |||||| | || ||| Sbjct 25560 TTTGGGGACCGAGAAGAGGGAGACTTGGGTCCGATATATGGGTTTCAGTGGCGTCATTTT 25619 Query 34436 GGGGCGGAGTATCGGGGGA-GCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCA 34494 || || |||||| | || | |||| || | || || | ||| || || || | Sbjct 25620 GGAGCTGAGTATAGAGGCATGCGA-GCCAATTACGCGAATGAAGGAATCGATCAATTG-A 25677 Query 34495 GT-ACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGT 34553 || | ||||| | || | || | || |||| |||||||| | | || ||| Sbjct 25678 GTCAAGTGATTAATACAATCAAAAATTATCCGAATGATAGAAGGATAATCTTATGTTCGT 25737 Query 34554 GGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCT 34613 |||| || ||| | || | ||||| || || || || || ||| ||||| | Sbjct 25738 GGAATCCTGTGGACATACCACAAATGGCTCTTCCACCCTGTCATTGTCTCGTACAATTTT 25797 Query 34614 ACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAG 34673 ||| |||| || |||| | | | || ||| |||||| || ||||| | | Sbjct 25798 TCGTAAATAATGACGAATTGTCTTCGTTGTTATACCAAAGATCGGCCGATATGGGACTGG 25857 Query 34674 GGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGT 34728 |||| |||||||||||||| ||||||||||| || ||| |||||| |||||||| Sbjct 25858 GGGTACCGTTCAACATTGCGAGTTACGCTCTCCTAACGGTCATGATAGCTCATGT 25912 Score = 107 bits (118), Expect = 2e-18 Identities = 312/475 (66%), Gaps = 4/475 (1%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| |||||| ||| || ||||||||||| |||||||||||||| ||||| | Sbjct 25912 ACATGAGCTATCATGACCGTTAGGAGAGCGTAACTCGCAATGTTGAACGGTACCCCCAGT 25853 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||| || |||||| ||| || | | | |||| || |||| ||| | ||| Sbjct 25852 CCCATATCGGCCGATCTTTGGTATAACAACGAAGACAATTCGTCATTATTTACGAAAAAT 25793 Query 6737 TGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCG 6796 || ||| || || || || || ||||| | || | ||| || ||||||| Sbjct 25792 TGTACGAGACAATGACAGGGTGGAAGAGCCATTTGTGGTATGTCCACAGGATTCCACGAA 25733 Query 6797 CACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGT-ACTGCAG 6855 || | | |||||||| |||| || | || | || | ||||| | ||| || Sbjct 25732 CATAAGATTATCCTTCTATCATTCGGATAATTTTTGATTGTATTAATCACTTGACT-CAA 25674 Query 6856 CTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGC-TCCCCCGATACTCCGCCCCAAAGT 6914 || || ||| | || || | || |||| | || | |||||| || ||||| | Sbjct 25673 TTGATCGATTCCTTCATTCGCGTAATTGGC-TCGCATGCCTCTATACTCAGCTCCAAAAT 25615 Query 6915 GTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCC 6974 | | |||||| ||||| || | ||| |||||||| ||||| || || |||||| Sbjct 25614 GACGCCACTGAAACCCATATATCGGACCCAAGTCTCCCTCTTCTCGGTCCCCAAACCCCA 25555 Query 6975 GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGA 7034 | |||| | | || | || | || | ||||| || || || | || || | Sbjct 25554 TTCTATCCAAATACTCCCTCGAACTGTTGACATCCCATATTTTTACGTTTCTGGTAGAAA 25495 Query 7035 GCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCC 7089 | || |||| || ||| || | | |||||||||| ||||||||| ||||| Sbjct 25494 GTTCTTTGGCATTTGTGCTTCCTTTTATTAACCACAGCATCTCCTCGACTACGCC 25440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448240054119360