Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq218 113 3e-20 seq428 98.7 7e-16 seq44 86.0 4e-12 >seq218 Length=661058 Score = 113 bits (124), Expect = 3e-20 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 |||||||||||||| ||||| | ||||| ||| || ||| | || || ||| | || Sbjct 352380 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 352321 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | || || || || || |||||||||||| |||| || | Sbjct 352320 GACACAATTGAAAAC--GTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACC 352263 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || ||||||||||| ||||||||||| || | | | ||||| ||||||| Sbjct 352262 AGCAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACA 352203 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 |||| || |||||||| || | ||||||||||| ||| Sbjct 352202 ACATTCAGAAAGAGAGTACCCTCCATTTGGTTTTACGT 352165 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| || |||||||| || || |||||||| Sbjct 357368 GACAAAGAAGGTATTCCTCCAGACCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAA 357309 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | | | ||||| ||||||||||| || |||||||| || | ||||||||||| Sbjct 357308 GATGGTAGAACATTGTCTGATTACAACATTCAGAAAGAGAGTACCCTCCATTTGGTTTTA 357249 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 357248 CGTCTTCGTGGAGG 357235 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||||||||| ||||| || || ||||| ||| || || | || || ||| | || Sbjct 356680 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCA 356621 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| || ||| |||||| ||||||||||| |||| || | Sbjct 356620 GATACAATTGAGAAT--GTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATC 356563 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| ||||||| ||||| ||||||||| |||| || | || | | | |||||||| | Sbjct 356562 AGCAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATA 356503 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 | || |||||||| |||| | |||||||| Sbjct 356502 ATATTCAAAAAGAATCCACTCTCCATTTGGT 356472 >seq428 Length=160056 Score = 98.7 bits (108), Expect = 7e-16 Identities = 152/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || ||||| ||| | || || || || || | || |||||| || Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || || |||||| || |||||||| |||| | Sbjct 129504 GA-----TACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTG 129558 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| |||||||||| |||||||||||||| || | || | ||||| |||| Sbjct 129559 ACCAACAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATT 129618 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||||||||||| || || ||||||||||| || Sbjct 129619 ACAACATCCAAAAGGAATCGACATTGCATTTGGTCTT 129655 >seq44 Length=1668621 Score = 86.0 bits (94), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 24527 GTTACCGGTGACATGCACAATTTGCCAAAAGGCTACCACGGATTTCATATTCACGAATTT 24586 || |||||||| || | ||| | ||||| ||||||||||||| | ||||||||| Sbjct 465879 GTGACCGGTGAAATTACCGGGTTGACGAAAGGACTCCACGGATTTCATGTGCACGAATTT 465938 Query 24587 GGCGATGTGACCAACGGTTGCACGTCGGCCGGTGAGCATTTCAATCCGTTTCACCAAGAT 24646 || || |||||||| || | || ||||||| |||||||||||| | || ||||| Sbjct 465939 GGTGACAACACCAACGGCTGTATTTCAGCCGGTGCTCATTTCAATCCGCATAACAAAGAT 465998 Query 24647 CACGGTGGTCCTAAGGATGCA 24667 || || | |||| |||||| Sbjct 465999 CATGGAGCTCCT---GATGCA 466016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355845103752876