Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq218 113 3e-20
seq428 98.7 7e-16
seq44 86.0 4e-12
>seq218
Length=661058
Score = 113 bits (124), Expect = 3e-20
Identities = 157/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847
|||||||||||||| ||||| | ||||| ||| || ||| | || || ||| | ||
Sbjct 352380 ATGCAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCA 352321
Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| || | || || || || || |||||||||||| |||| || |
Sbjct 352320 GACACAATTGAAAAC--GTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACC 352263
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
||||||| || ||||||||||| ||||||||||| || | | | ||||| |||||||
Sbjct 352262 AGCAACGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACA 352203
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005
|||| || |||||||| || | ||||||||||| |||
Sbjct 352202 ACATTCAGAAAGAGAGTACCCTCCATTTGGTTTTACGT 352165
Score = 102 bits (112), Expect = 6e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942
|||||||||||| |||| || || ||||| || |||||||| || || ||||||||
Sbjct 357368 GACAAAGAAGGTATTCCTCCAGACCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAA 357309
Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002
|| | | | ||||| ||||||||||| || |||||||| || | |||||||||||
Sbjct 357308 GATGGTAGAACATTGTCTGATTACAACATTCAGAAAGAGAGTACCCTCCATTTGGTTTTA 357249
Query 28003 CGTTTGCGTGGCGG 28016
||| | ||||| ||
Sbjct 357248 CGTCTTCGTGGAGG 357235
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847
||||||||||| ||||| || || ||||| ||| || || | || || ||| | ||
Sbjct 356680 ATGCAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCA 356621
Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| || | ||| || ||| |||||| ||||||||||| |||| || |
Sbjct 356620 GATACAATTGAGAAT--GTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATC 356563
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| ||||||| ||||| ||||||||| |||| || | || | | | |||||||| |
Sbjct 356562 AGCAGAGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATA 356503
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998
| || |||||||| |||| | ||||||||
Sbjct 356502 ATATTCAAAAAGAATCCACTCTCCATTTGGT 356472
>seq428
Length=160056
Score = 98.7 bits (108), Expect = 7e-16
Identities = 152/217 (70%), Gaps = 10/217 (5%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
|||||||| || ||||| ||| | || || || || || | || |||||| ||
Sbjct 129444 ATGCAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCC 129503
Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
|| |||||||| || || |||||| || |||||||| |||| |
Sbjct 129504 GA-----TACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTG 129558
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| || ||||| |||||||||| |||||||||||||| || | || | ||||| ||||
Sbjct 129559 ACCAACAACGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATT 129618
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001
||||||||||||| || || ||||||||||| ||
Sbjct 129619 ACAACATCCAAAAGGAATCGACATTGCATTTGGTCTT 129655
>seq44
Length=1668621
Score = 86.0 bits (94), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 3/141 (2%)
Strand=Plus/Plus
Query 24527 GTTACCGGTGACATGCACAATTTGCCAAAAGGCTACCACGGATTTCATATTCACGAATTT 24586
|| |||||||| || | ||| | ||||| ||||||||||||| | |||||||||
Sbjct 465879 GTGACCGGTGAAATTACCGGGTTGACGAAAGGACTCCACGGATTTCATGTGCACGAATTT 465938
Query 24587 GGCGATGTGACCAACGGTTGCACGTCGGCCGGTGAGCATTTCAATCCGTTTCACCAAGAT 24646
|| || |||||||| || | || ||||||| |||||||||||| | || |||||
Sbjct 465939 GGTGACAACACCAACGGCTGTATTTCAGCCGGTGCTCATTTCAATCCGCATAACAAAGAT 465998
Query 24647 CACGGTGGTCCTAAGGATGCA 24667
|| || | |||| ||||||
Sbjct 465999 CATGGAGCTCCT---GATGCA 466016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355845103752876
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |