Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq218 170 4e-37 seq25 140 8e-28 seq428 138 3e-27 seq244 87.8 4e-12 >seq218 Length=661058 Score = 170 bits (188), Expect = 4e-37 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || ||||| || |||||||| || || || || | |||||| | |||||||| | |||| Sbjct 356250 TGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCTAACTGC 356309 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || || || || ||||||||||| ||||||| ||||||||||| || || || Sbjct 356310 TTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTA 356369 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 ||| |||||||| || || ||||| ||||| || |||||||| |||||||| || Sbjct 356370 GCTTTAACGTTTTCAATTGTATCAGATGGCTCAACTTCTAGAGTGATGGTCTTTCCAGTA 356429 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||||||||| | ||||||| Sbjct 356430 AGAGTCTTTACAAAGATCTGCATT 356453 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 ||||| ||||| ||||| |||||||| ||||| | | ||||| |||||||| |||||| Sbjct 356706 TGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAATGTCCTACCATCTTCAAGCTGC 356765 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || || || | | ||||||||| || |||| || || || || || || || Sbjct 356766 TTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCCTCTTTATCTTGAATTTTA 356825 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| || || |||||||| ||| ||||| || ||||| || || || || Sbjct 356826 GCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACCTCAAGGGTGATTGTTTTACCAGTT 356885 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 || ||||| ||||| | ||||||| Sbjct 356886 AGTGTCTTAACAAAAATCTGCATT 356909 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | || |||||||| |||||||| || |||||||| | ||||| | || Sbjct 356465 TCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACC 356524 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||||||| || || ||||| ||||| | | || || || || |||| ||||| || Sbjct 356525 ATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTT 356584 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| || || ||| ||| || || || || || || || |||||| || | |||||| Sbjct 356585 GTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGAT 356644 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| || || ||||| ||||| || || | ||||| Sbjct 356645 CGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || || | || || || |||||| || ||||| ||||| | | Sbjct 357237 TCCACGAAGACGTAAAACCAAATGGAGGGTACTCTCTTTCTGAATGTTGTAATCAGACAA 357296 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || || |||||||||| ||||| || || || || | ||||||||||| ||||||| Sbjct 357297 TGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGAGGAAT 357356 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 ||||| |||||||||||||| ||||| ||||| || ||||| || ||| || || Sbjct 357357 ACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATTGTGTCTGACGGTTCTACTTC 357416 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 || ||||| || || || || || ||||| |||| Sbjct 357417 CAGTGTGATTGTTTTACCAGTTAGTGTCTTAACAA 357451 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 |||||| || ||||| ||||| | | || || |||||||||| || || || || || Sbjct 352189 CTCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAA 352248 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 || | ||||| ||||| ||||||| ||||| |||||||||||||| |||||||| Sbjct 352249 AATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTT 352308 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||| || ||||| || ||| || || || ||||| || ||||| || | || || || Sbjct 352309 TTCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAAC 352368 Query 211103 AAACACCTGCAT 211114 ||| | ||||| Sbjct 352369 AAAAATTTGCAT 352380 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || || || || || |||||||| | |||||| | ||||||||||| ||| || || Sbjct 356028 GTAGATTCCTTCTGAATATTATAATCTGAAAGGGTTCGTCCATCTTCCAACTGTTTCCCG 356087 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || || ||||| |||||||| || || || | ||||||||||| || || || ||| Sbjct 356088 GCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGAATTTTGGCTTTG 356147 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 |||||||| || || ||||| || || || || || || || || || || | || Sbjct 356148 ACGTTTTCTATTGTATCAGATGGCTCTACTTCAAGGGTTATAGTTTTACCAGTTAATGTT 356207 Query 211098 TTTACAAACACCTGCAT 211114 || || || | ||||| Sbjct 356208 TTGACGAAGATTTGCAT 356224 Score = 105 bits (116), Expect = 2e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||| ||||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 352028 CGTTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATT 352087 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 ||||| || ||| || || || ||||| || ||||| || || ||||| ||||| | | Sbjct 352088 GTGTCTGACGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAGTGTCTTAACAAAAATC 352147 Query 211110 TGCATT 211115 |||||| Sbjct 352148 TGCATT 352153 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 ||||||||||| ||||||| ||||| |||||||||||||| || |||||||| || Sbjct 357109 CGTTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTAACGTTTTCAATT 357168 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 ||||| || ||| || || || ||||| || ||||| || | || || ||||| | Sbjct 357169 GTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATT 357228 Query 211110 TGCAT 211114 ||||| Sbjct 357229 TGCAT 357233 >seq25 Length=1883024 Score = 140 bits (154), Expect = 8e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || || ||||| || |||||||| || | ||| || | |||||||| | ||||| || Sbjct 1512055 GTCGATTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATCTTCTAATTGCTTACCA 1512114 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | | ||||| |||||||||| ||||||||||| || ||||| || Sbjct 1512115 GCGAAAATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTCGCCTTT 1512174 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| ||||| ||| ||||||||| || ||||| || ||||| || ||||| Sbjct 1512175 ACATTTTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTAAGAGTT 1512234 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 1512235 TTCACAAAAATTTGCAT 1512251 >seq428 Length=160056 Score = 138 bits (152), Expect = 3e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||||| ||| | || | || || || ||||||||||| ||||| | | || | || Sbjct 129659 TCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCC 129600 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| || || || || || || || |||||||||||||| |||| |||||| || Sbjct 129599 ATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTT 129540 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 || ||||| ||| ||||| |||||||| || || || ||| ||||| | |||||| Sbjct 129539 ATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGAT 129480 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| || || | ||||| Sbjct 129479 GGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 >seq244 Length=378362 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 139806 CCTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAA 139865 ||||||||| ||||| |||||||| || || ||||| | ||||||| || | ||| Sbjct 10585 CCTTCCAAAAAAGCATGGAAGAGGGGGTCAGTCTGCGTTACGTTTTGCGCGATTAAGAAT 10526 Query 139866 GGAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT--- 139922 ||||||||| |||||||| | ||||||||||| ||| |||| ||| ||||| Sbjct 10525 GGAAAAGAGACACAACTATGTAAGAAAAGTTGCCGAGGTTGCAACGCAGCTCTTTATAAC 10466 Query 139923 CAAAGACAA 139931 ||| ||||| Sbjct 10465 CAATGACAA 10457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159092771679620