Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq428 158 3e-33 seq218 138 3e-27 seq3988 131 4e-25 seq25 125 2e-23 seq40 120 7e-22 >seq428 Length=160056 Score = 158 bits (174), Expect = 3e-33 Identities = 153/197 (78%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| ||||||| |||||||| | |||||| | |||||||| | || || ||| Sbjct 129640 GTCGATTCCTTTTGGATGTTGTAATCAGACAAAGTACGGCCATCTTCCAATTGTTTTCCA 129581 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || || ||||||||||| || ||||| ||||| || |||||||| ||| |||| Sbjct 129580 GCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCCTTCTTTATCTTGGATTTTTGCCTTC 129521 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| || || || | ||| || ||||| ||||| ||||| ||||| ||||| Sbjct 129520 ACATTTTCGATTGTATCGGACGGTTCGACCTCTAAAGTGATGGTCTTACCCGTTAAAGTC 129461 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 129460 TTCACGAATATTTGCAT 129444 >seq218 Length=661058 Score = 138 bits (152), Expect = 3e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| ||||||||||| | |||||| || | | || | |||||||||| |||| Sbjct 356250 TGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCTAACTGC 356309 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 |||||||| || || || ||||||||||| || |||||||||||||||||||| || ||| Sbjct 356310 TTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAAT-TTT 356368 Query 225631 TGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || || ||| || || || || | || || |||| ||||| ||||| || || Sbjct 356369 AGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACTTCTAGAGTGATGGTCTTTCCAGT 356428 Query 225690 CAAAGTTTTTATGAACACTTGCATT 225714 | ||| |||| || | |||||| Sbjct 356429 AAGAGTCTTTACAAAGATCTGCATT 356453 Score = 125 bits (138), Expect = 2e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 ||||| || | |||||||| | ||| ||||| |||||||| | ||||| ||||| || Sbjct 357271 TCTTTCTGAATGTTGTAATCAGACAATGTTCTACCATCTTCCAATTGCTTACCAGCAAAA 357330 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || | ||||||||||| || ||||||||||| ||||| |||||||| ||||||| | Sbjct 357331 ATCAAACGTTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTT 357390 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || || |||||||| | ||| || || | ||||| || || || || Sbjct 357391 TCAATTGTGTCTGACGGTTCTACTTCCAGTGTGATTGTTTTACCAGT 357437 Score = 123 bits (136), Expect = 6e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225523 TCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAG 225582 ||||| || | |||||||| | ||||||||| |||||||| | || || || || || Sbjct 352190 TCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAA 352249 Query 225583 ATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCT 225642 || | ||||| ||||| || ||||||||||| ||||| |||||||| |||||| | Sbjct 352250 ATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTT 352309 Query 225643 TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATG 225702 || || |||||||| | ||| || || | ||||| || || || || || ||||| | Sbjct 352310 TCAATTGTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACA 352369 Query 225703 AACACTTGCAT 225713 || | |||||| Sbjct 352370 AAAATTTGCAT 352380 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | |||||||||||||||||||| | ||| ||||||| | || | || Sbjct 356465 TCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACC 356524 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| || || || || || ||||| | | || || || || ||||| ||||| || Sbjct 356525 ATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTT 356584 Query 225618 GTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 |||||| || |||||| || ||| || || || ||||| | ||| || ||||| |||| Sbjct 356585 GTCTTGAAT-TTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGA 356643 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||| || || || | || || | ||| | |||||| Sbjct 356644 TCGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 116 bits (128), Expect = 9e-21 Identities = 133/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || ||||||||||| |||| |||||||| | ||| || || |||||||| |||||| Sbjct 356706 TGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAATGTCCTACCATCTTCAAGCTGC 356765 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| || || | || ||||||||| || |||||||| || || ||||| || || Sbjct 356766 TTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCCTCTTTATCTTGAATTTTA 356825 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| || || || ||||| || | ||| || || | ||||| || || || || Sbjct 356826 GCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACCTCAAGGGTGATTGTTTTACCAGT 356884 Score = 105 bits (116), Expect = 2e-17 Identities = 158/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| |||| || | || | || ||||| || || | ||| ||||| | | ||| Sbjct 356004 CGAAGCCTCAATACCAAATGTAATGTAGATTCCTTCTGAATATTATAATCTGAAAGGGTT 356063 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| | ||| ||||| || || ||||| |||||||| || || || |||||| Sbjct 356064 CGTCCATCTTCCAACTGTTTCCCGGCAAAAATAAGACGTTGTTGATCTGGTGGGATACCT 356123 Query 225613 TCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||| || ||| || || || ||| || || || || | || || || | Sbjct 356124 TCCTTGTCTTGAAT-TTTGGCTTTGACGTTTTCTATTGTATCAGATGGCTCTACTTCAAG 356182 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || || || || ||||| | ||| | |||||| Sbjct 356183 GGTTATAGTTTTACCAGTTAATGTTTTGACGAAGATTTGCAT 356224 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 ||||||||||| || ||||||||||| ||||| |||||||| ||| || ||| || Sbjct 357109 CGTTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTAACGTTTTCAATT 357168 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 |||||||| | ||| || || | ||||| || || || || || ||||| | || | | Sbjct 357169 GTGTCTGATGGTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAACAAAAATT 357228 Query 225709 TGCAT 225713 ||||| Sbjct 357229 TGCAT 357233 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 ||||||||||| || ||||||||||| ||||| |||||||| ||||||| ||| || Sbjct 352028 CGTTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTTTCAATT 352087 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| | ||| || || | ||||| || || || || Sbjct 352088 GTGTCTGACGGTTCTACTTCCAGTGTGATGGTTTTTCCAGT 352128 >seq3988 Length=15942 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | ||| ||| |||| | || || |||||| |||| || ||||| ||| |||| || Sbjct 11336 ATTAATTGGCAATGACCAAATCTATAATGTTATTGTTACTGCTCATGCTTTTATTATAAT 11395 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 |||||| | ||||| || |||| ||||| || || ||||| ||||| ||||||||||| Sbjct 11396 TTTCTTCATGGTTATACCTATTATAATAGGGGGATTTGGAAACTGATTGGTTCCTTTAAT 11455 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | | || || |||||||| ||||| || | | || |||||||| || || |||| || Sbjct 11456 GTTAGGGGCACCTGATATAGCTTTCCCCCGAATAAATAATATAAGATTCTGGCTACTCCC 11515 Query 7716 GCCTTCCTTA 7725 || || ||| Sbjct 11516 TCCCTCTTTA 11525 Score = 84.2 bits (92), Expect = 5e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| || |||||||||||||| || | |||||||||||| ||||| || ||||| || | Sbjct 11924 TTCGGGGTGACCAAAAAATCAAAAGAGATGTTGATAAAGAATAGGGTCTCCTCCTCCAGC 11865 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || ||||| || ||||| || |||| ||| ||||||| Sbjct 11864 CGGGTCAAAGAATGATGTATTTAAGTTTCGATCTGTTAAAA 11824 >seq25 Length=1883024 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| || | || || || | | ||| | |||||||||| ||||| ||| Sbjct 1512055 GTCGATTCTTTCTGAATGTTATAGTCAGAAAGAGTACGGCCATCTTCTAATTGCTTACCA 1512114 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | | ||||| || || |||||||||||||||||||| ||||| ||| Sbjct 1512115 GCGAAAATTAACCTCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTCGCCTTT 1512174 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| |||||| |||||||||| ||| || || | ||||| || || || || | |||| Sbjct 1512175 ACATTTTCGATTGTGTCTGAGGGTTCAACCTCAAGGGTGATTGTTTTTCCGGTAAGAGTT 1512234 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 1512235 TTCACAAAAATTTGCAT 1512251 >seq40 Length=1615507 Score = 120 bits (132), Expect = 7e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 7542 TGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTT 7601 ||| ||| |||| | || || || ||| |||| || || || ||| ||| |||||||| Sbjct 705864 TGGCAATGACCAAATCTATAATGTCATTGTTACTGCTCACGCTTTTATTAAAATTTTCTT 705805 Query 7602 TTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGG 7661 | ||||| || | || ||||| || || ||||||||||| || ||||||||| | || Sbjct 705804 CATGGTTATACCTATCATAATAGGGGGATTTGGAAATTGATTAGTCCCTTTAATGTTAGG 705745 Query 7662 TGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || |||||||| ||||| || | | || |||||||| || |||||||| || || || Sbjct 705744 GGCACCTGATATAGCTTTCCCTCGAATAAATAATATAAGATTCTGATTACTCCCACCCTC 705685 Query 7722 CTTA 7725 ||| Sbjct 705684 TTTA 705681 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| ||| |||||||||| ||||||||||||||||| |||||||| ||||| || | Sbjct 706165 TTCAGGGTGATCAAAAAATCAAAATAAATGTTGATAAAGAATAGGATCTCCTCCTCCAGC 706224 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 || |||||||| ||||| ||||||| || ||||||| Sbjct 706225 GGGGTCAAAAAATGATGTATTTAAATTTCGGTCTGTTAAAA 706265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192470266127672