Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_030240.1
Length=128058
Score E
Sequences producing significant alignments: (Bits) Value
seq428 93.3 3e-14
seq218 91.5 1e-13
seq44 84.2 2e-11
>seq428
Length=160056
Score = 93.3 bits (102), Expect = 3e-14
Identities = 113/154 (73%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071
|| || | ||||||||| |||| ||||| || ||||| ||||| || |||||||| | |
Sbjct 129670 CCTCCCCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGAC 129611
Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131
| ||| | ||||||||||||||| || ||| | || || | ||||||||| ||
Sbjct 129610 AAAGTACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGA 129551
Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165
| |||||||| || |||||| |||||||
Sbjct 129550 ATTCCTTCTTTATCTTGGATTTTTGCCTTCACAT 129517
>seq218
Length=661058
Score = 91.5 bits (100), Expect = 1e-13
Identities = 115/156 (74%), Gaps = 4/156 (3%)
Strand=Plus/Plus
Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071
|| |||| |||||| | |||| || | ||| ||||||||||||||||| |||||||
Sbjct 356454 CCTCCTCTCAATCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGG-- 356511
Query 101072 ATAGTTTTGGA--ATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129
| || | || |||||||| |||||| || ||| | || | ||| || || ||| |
Sbjct 356512 AGAGGGTACGACCATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTG 356571
Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACAT 101165
| | |||||||||||| ||||||| ||| ||||
Sbjct 356572 GAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACAT 356607
Score = 82.4 bits (90), Expect = 6e-11
Identities = 135/193 (70%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 101048 TCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATAT 101107
||||| ||||| |||||||| | || |||| | ||||||||||||||| || ||| |
Sbjct 352190 TCTTTCTGAATGTTGTAATCAGACAAAGTTCTACCATCTTCCAATTGTTTACCGGCAAAA 352249
Query 101108 ATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCG 101167
|| | | ||| |||||| || | ||||||||||| || || ||||| |
Sbjct 352250 ATCAAACGTTGCTGGTCTGGAGGAATACCTTCTTTGTCCTGGATCTTAGCCTTCACGTTT 352309
Query 101168 GCCACCGTCTCTGTGGACGTTGT--TTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAA 101225
| | || |||| | ||| | ||| | || || ||||| || || || |||||||
Sbjct 352310 TCAATTGTGTCTGATG--GTTCTACTTCCAGTGTGATGGTTTTTCCAGTTAACGTTTTAA 352367
Query 101226 TAAAAATTTGCAT 101238
||||||||||||
Sbjct 352368 CAAAAATTTGCAT 352380
>seq44
Length=1668621
Score = 84.2 bits (92), Expect = 2e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 103375 ACGTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCGCCGTGCGTTTCGCCG 103434
||||| || | ||||||||||||||| ||| || || || || || || || |
Sbjct 466048 ACGTTTCCAAGATCGCCAACGTGTCTCACGTCTGCATCAGGAGCTCCATGATCTTTGTTA 465989
Query 103435 GTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTGTCGCCAAACTCGTGC 103494
||||| ||||| | ||||| || | ||||||||| | |||| ||||| ||||||
Sbjct 465988 TGCGGATTGAAATGAGCACCGGCTGAAATACAGCCGTTGGTGTTGTCACCAAATTCGTGC 465929
Query 103495 ACGTGAAAACCGTGCAATCCTTTGGGCAA 103523
|| ||||| ||||| | |||||| | |||
Sbjct 465928 ACATGAAATCCGTGGAGTCCTTTCGTCAA 465900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409640888948892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |