Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq296 138 8e-28 >seq296 Length=775295 Score = 138 bits (152), Expect = 8e-28 Identities = 399/605 (66%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 27103 GTGGGAAAGGGTCTGGGCTCCCTCTCGA-GCTGAGTCTT-CAGCGGTTCCACGTGATCCA 27160 |||||||| | | || |||| |||| |||| ||||| || | ||| | ||||| Sbjct 26026 GTGGGAAATGTCTTTGGAACCCT-TCGAAGCTG-GTCTTTCAAAGCTTCTATGTGATTTT 25969 Query 27161 GGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 27220 | | | |||| ||| || | ||||| | ||| || | |||| || ||||| || | Sbjct 25968 GAAATATGTGACTGTCGCCAATCGTGTGTATAAATTCGCTGGGTTTTAAACCGGTCACAT 25909 Query 27221 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 27280 |||| |||||| ||| ||||||| ||| || || ||||| || |||||||| || |||| Sbjct 25908 GAGCTATCATGACCGTTAGGAGAGCGTAACTCGCAATGTTGAACGGTACCCCCAGTCCCA 25849 Query 27281 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGAC 27340 | || |||| || ||||| | | | || | || ||| ||||| |||| || Sbjct 25848 TATCGGCCGATCTTTGGTATAACAACGAAGACAATTCGTCATTATTTACGAAAAATTGTA 25789 Query 27341 ATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACA 27400 | || || || ||||||||||| | | ||| || ||||| | || | Sbjct 25788 CGAGACAATGACAGGGTGGAAGAGCCATTTGTGGTATGTCCACAGGATTCCACGAACATA 25729 Query 27401 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 27460 ||| || | || || | || | || |||| | | | | || |||| Sbjct 25728 AGATTATCCTTCTATCATTCGGATAATTTTTGATTGTATTAATCACTTGACTCAATTGAT 25669 Query 27461 CCACCCC--CATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 27518 | | || ||| | || || | | | |||| | | ||||| ||||| ||||| | Sbjct 25668 CGATTCCTTCATTCGCG--TAATTGGCTCGCATGCCTCTATACTCAGCTCCAAAATGACG 25611 Query 27519 CCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 27578 ||| || ||||| || | ||| |||| |||||||||||| | || | | || ||| | | Sbjct 25610 CCACTGAAACCCATATATCGGACCCAAGTCTCCCTCTTCTCGGTCCCCAAACCCCATTCT 25551 Query 27579 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG--GAGAGC 27636 |||||| | || || |||| |||| | ||||| || |||| | |||| | || || Sbjct 25550 ATCCAAATACTCCCTCGAACTGTTGACATCCCATATTTTTA--CGTTTCTGGTAGAAAGT 25493 Query 27637 TCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAA 27696 ||||||| |||||| ||| | | |||||||||| |||||| || ||| | |||| Sbjct 25492 TCTTTGGCATTTGTGCTTCCTTTTATTAACCACAGCATCTCCTCGACTACGCCACGCCAA 25433 Query 27697 AAGAC 27701 ||||| Sbjct 25432 AAGAC 25428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369489240564428