Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq218 129 1e-24
seq428 89.7 1e-12
>seq218
Length=661058
Score = 129 bits (142), Expect = 1e-24
Identities = 158/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948
|||||| || | ||| ||||| || |||||||| || || ||||||| | || | ||
Sbjct 356465 TCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACC 356524
Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008
|||||| || ||| || || ||||| | ||||||||| || | | || ||||| ||
Sbjct 356525 ATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTT 356584
Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068
|||||||||||| ||| ||| |||| | | ||||| || ||||| | ||| ||
Sbjct 356585 GTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGAT 356644
Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || ||||| ||||||||||| | |||||
Sbjct 356645 CGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680
Score = 104 bits (114), Expect = 5e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967
||||| || || || || || ||||| | | |||| |||||||| | |||||||
Sbjct 356028 GTAGATTCCTTCTGAATATTATAATCTGAAAGGGTTCGTCCATCTTCCAACTGTTTCCCG 356087
Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027
|| || ||||| | || || || | | ||| |||||||| ||||||||||| ||||
Sbjct 356088 GCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGAATTTTGGCTTTG 356147
Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087
|| | |||| | || || |||||||||||| || |||||||| || || | ||
Sbjct 356148 ACGTTTTCTATTGTATCAGATGGCTCTACTTCAAGGGTTATAGTTTTACCAGTTAATGTT 356207
Query 152088 TTCACGAAGACCTGCAT 152104
|| ||||||| |||||
Sbjct 356208 TTGACGAAGATTTGCAT 356224
Score = 100 bits (110), Expect = 7e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
|||||| || || ||||| |||||||||||||| | || || || |||||||| ||
Sbjct 356705 ATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAATGTCCTACCATCTTCAAGCTG 356764
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
|| || || || || | || || ||||| | | || || || || |||||||||||
Sbjct 356765 CTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCCTCTTTATCTTGAATTTT 356824
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
|| || |||||| |||| || ||||| ||||| || || ||||| || ||
Sbjct 356825 AGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACCTCAAGGGTGATTGTTTTACCAGT 356884
Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105
|| ||||| || || | |||||||
Sbjct 356885 TAGTGTCTTAACAAAAATCTGCATT 356909
Score = 95.1 bits (104), Expect = 3e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| ||||| || |||||||| || ||||| || | | || | ||||||||||
Sbjct 356249 ATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCTAACTG 356308
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||||| || || || || | || ||||| | | || |||||||| |||||||||||
Sbjct 356309 CTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTT 356368
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
||| || | || | | || || ||| ||||| ||||| || || || || ||
Sbjct 356369 AGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACTTCTAGAGTGATGGTCTTTCCAGT 356428
Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105
|||||||| || |||| |||||||
Sbjct 356429 AAGAGTCTTTACAAAGATCTGCATT 356453
>seq428
Length=160056
Score = 89.7 bits (98), Expect = 1e-12
Identities = 153/222 (69%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| | ||| | ||| | ||| | || || || ||||||||||||||||| | |||||
Sbjct 129665 CCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGT 129606
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| | ||| || || || || || | || ||||| | | |||||
Sbjct 129605 ACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCC 129546
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||| || ||||| |||||| || ||| | || | | || || || || || |
Sbjct 129545 TTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAA 129486
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || || ||||| | |||||||||||| | |||||
Sbjct 129485 AGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153761844083948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |