Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq218 129 1e-24 seq428 89.7 1e-12 >seq218 Length=661058 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 |||||| || | ||| ||||| || |||||||| || || ||||||| | || | || Sbjct 356465 TCTGAGTACCAAATGGAGAGTGGATTCTTTTTGAATATTATAATCGGAGAGGGTACGACC 356524 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || ||| || || ||||| | ||||||||| || | | || ||||| || Sbjct 356525 ATCTTCCAGTTGTTTTCCTGCAAAGATTAACCTCTGCTGATCTGGTGGAATGCCTTCTTT 356584 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||||||| ||| ||| |||| | | ||||| || ||||| | ||| || Sbjct 356585 GTCTTGAATTTTTGCTTTAACATTCTCAATTGTATCTGATGGTTCAACTTCTAAAGTGAT 356644 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || ||||| ||||||||||| | ||||| Sbjct 356645 CGTTTTACCAGTGAGGGTCTTCACGAAAATTTGCAT 356680 Score = 104 bits (114), Expect = 5e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 ||||| || || || || || ||||| | | |||| |||||||| | ||||||| Sbjct 356028 GTAGATTCCTTCTGAATATTATAATCTGAAAGGGTTCGTCCATCTTCCAACTGTTTCCCG 356087 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || || ||||| | || || || | | ||| |||||||| ||||||||||| |||| Sbjct 356088 GCAAAAATAAGACGTTGTTGATCTGGTGGGATACCTTCCTTGTCTTGAATTTTGGCTTTG 356147 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | |||| | || || |||||||||||| || |||||||| || || | || Sbjct 356148 ACGTTTTCTATTGTATCAGATGGCTCTACTTCAAGGGTTATAGTTTTACCAGTTAATGTT 356207 Query 152088 TTCACGAAGACCTGCAT 152104 || ||||||| ||||| Sbjct 356208 TTGACGAAGATTTGCAT 356224 Score = 100 bits (110), Expect = 7e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 |||||| || || ||||| |||||||||||||| | || || || |||||||| || Sbjct 356705 ATGAAGGGTGGATTCTTTCTGGATGTTGTAATCAGACAATGTCCTACCATCTTCAAGCTG 356764 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || || || || || | || || ||||| | | || || || || ||||||||||| Sbjct 356765 CTTGCCAGCAAAAATTAATCTTTGTTGGTCTGGTGGAATACCCTCTTTATCTTGAATTTT 356824 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 || || |||||| |||| || ||||| ||||| || || ||||| || || Sbjct 356825 AGCCTTTACGTTCTCTATTGTGTCAGACGGTTCTACCTCAAGGGTGATTGTTTTACCAGT 356884 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| || || | ||||||| Sbjct 356885 TAGTGTCTTAACAAAAATCTGCATT 356909 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| ||||| || |||||||| || ||||| || | | || | |||||||||| Sbjct 356249 ATGCAGAGTCGATTCTTTTTGAATATTGTAGTCAGAAAGGGTGCGACCATCTTCTAACTG 356308 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||||| || || || || | || ||||| | | || |||||||| ||||||||||| Sbjct 356309 CTTCCCAGCAAAAATTAGACGTTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTT 356368 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||| || | || | | || || ||| ||||| ||||| || || || || || Sbjct 356369 AGCTTTAACGTTTTCAATTGTATCAGATGGCTCAACTTCTAGAGTGATGGTCTTTCCAGT 356428 Query 152081 GAGAGTCTTCACGAAGACCTGCATT 152105 |||||||| || |||| ||||||| Sbjct 356429 AAGAGTCTTTACAAAGATCTGCATT 356453 >seq428 Length=160056 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| | ||| | ||| | ||| | || || || ||||||||||||||||| | ||||| Sbjct 129665 CCTCAATCTTAAGACCAAATGCAATGTCGATTCCTTTTGGATGTTGTAATCAGACAAAGT 129606 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| | ||| || || || || || | || ||||| | | ||||| Sbjct 129605 ACGGCCATCTTCCAATTGTTTTCCAGCAAAAATTAGACGTTGTTGGTCAGGTGGAATTCC 129546 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || ||||| |||||| || ||| | || | | || || || || || | Sbjct 129545 TTCTTTATCTTGGATTTTTGCCTTCACATTTTCGATTGTATCGGACGGTTCGACCTCTAA 129486 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || || ||||| | |||||||||||| | ||||| Sbjct 129485 AGTGATGGTCTTACCCGTTAAAGTCTTCACGAATATTTGCAT 129444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153761844083948