Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq12 347 1e-90 >seq12 Length=2314596 Score = 347 bits (384), Expect = 1e-90 Identities = 613/891 (69%), Gaps = 8/891 (1%) Strand=Plus/Minus Query 23209 ACACCCATTTTTTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT 23268 || || || ||||||||||| || || |||| || ||||||||||| || || Sbjct 282096 ACTCCAATCTTTTGATATTCACCTACTTTCTTTTCAAAGAAATTTGTCTTGCCATCAGTG 282037 Query 23269 GATATATTTTCCATAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAAT 23328 || || || | |||||| ||||| ||||| | |||||| | | ||| || Sbjct 282036 GAAATTTTGTTCATAAAGTCAAACGGATTCTTAACATTATAAATCTTATCACAACCCAAC 281977 Query 23329 TCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATA 23388 || |||||| | || ||||||||||| ||||| ||| |||||| | | || ||| Sbjct 281976 TCTACTAAAAGACGGTCAGCTACAAATTCGATATACTGAGACATCAGTTTGCAATTCATA 281917 Query 23389 CCTATTAGTTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCT 23448 || ||||| |||| || | |||||| ||| ||| | |||||| ||| ||||| Sbjct 281916 CCAATTAGGCTTACAGGCAAAGCATCAGTTAAAAATTCCTGTTCAATTTTAACTGCATCG 281857 Query 23449 TTAATTATTTGAACAATAACTTCTTCACTAGGTGGATATTTTAA----ATACTTAAACAA 23504 |||||| | | | ||| || | | ||| | ||| || ||| ||||| Sbjct 281856 CGAATTATAT---CTGTTACTCGCTCTTTTGATGGTT-TTTGAACAATATAAGAAAACAT 281801 Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 |||||| |||||||||||||| | |||||||| | | ||| | |||||||||||||| Sbjct 281800 TAAACAAGCAAAATCACAATGCAAACCTTCATCGCGAGAAATAAGCTCATTAGAAAATGT 281741 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAA 23624 | ||||||||| | || ||||| || | |||||| || |||||||| ||| ||||| Sbjct 281740 CAGTCCTGGCATAAGACCCCGTTTCTTGAGCCAAAAGATAGCAGCAAAACTTCCTGAAAA 281681 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 |||||| || || ||||| ||||| || |||| ||| ||||||||||| | | Sbjct 281680 GAAAATTCCTTCCACAGCTGCAAATGCAACAACTCGTTCTGGGAATGTTGCATTCTTACT 281621 Query 23685 AGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGC 23744 ||||| | | ||||| ||||||| || ||||| || |||||||| || Sbjct 281620 GCTGATCCAATGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGCATGGTTTCAATAGC 281561 Query 23745 TTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATA 23804 || || ||||| ||| ||||| || |||||| || ||||| || |||||| Sbjct 281560 ATTGAAAAGAAATTCTTTCTCTTCTGGGTCAAATATATAAGTGTCAATGAGAGTACTATA 281501 Query 23805 CATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGA 23864 |||||| ||||| ||||||||||| ||||| || || |||||||| || | ||| |||| Sbjct 281500 CATTTCTGAATGGATATTTTCAATGGCAATTTGGAAACCATAAAAGCAACGAGCCTCAGT 281441 Query 23865 CAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGC 23924 | ||| || || | | ||||| | | | ||||| || ||||| |||||| || Sbjct 281440 TACTTGTACTTCTTGACTGAATCTCTCTACAAGGTTTTCATTTACAATTCCATCAGATGC 281381 Query 23925 AGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCA 23984 |||||| || ||||| |||| | || ||||| ||||||||| |||| || || | ||| Sbjct 281380 AGCAAAAAAGGCAAGTACATGTGAAATGAAATGCCTTTCATCATTTGACAACTTATCCCA 281321 Query 23985 ATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACG 24044 | || || || || | || ||||| || |||||| || || || Sbjct 281320 GTGGGCAAGGTCCTTAGAAAGGTCTACTTCTTCTGTTGTCCAGAAGGAAGCTTCAGCTTC 281261 Query 24045 CTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCT 24095 ||| ||| || |||||| || || ||| || |||||||||||||| || Sbjct 281260 CTTGTACTTTTCCCAAATGTCTGGATATTGAATAGGAAATATTACGAACCT 281210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521462003823200