Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05]
3,988 sequences; 353,562,607 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq218 152 1e-31
seq25 147 5e-30
seq428 132 1e-25
>seq218
Length=661058
Score = 152 bits (168), Expect = 1e-31
Identities = 165/219 (75%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || ||||| || ||||||||||| | || || ||| |||||
Sbjct 356677 CAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCAGAT 356618
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || ||||| || ||| ||| ||||| ||||||||||| || || || || |||||
Sbjct 356617 ACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAGCAG 356558
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | ||||| || |||||||| || |||||||| | || || |||||||||| |
Sbjct 356557 AGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAATATT 356498
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || || ||| | || | ||| | |||
Sbjct 356497 CAAAAAGAATCCACTCTCCATTTGGTACTCAGATTGAGA 356459
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || |||||||| ||||| || || || ||| ||||||
Sbjct 352377 CAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCAGAC 352318
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||| |||||||||||||| || ||||| |||||||||
Sbjct 352317 ACAATTGAAAACGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAGCAA 352258
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | || || ||||| ||||| | |||||||| || ||| | | ||||| ||| |
Sbjct 352257 CGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAACATT 352198
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132
|| ||||| || || ||| | |||||
Sbjct 352197 CAGAAAGAGAGTACCCTCCATTTGGTTTT 352169
Score = 129 bits (142), Expect = 1e-24
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || ||||| || ||||| || ||||| || || || || || ||
Sbjct 356449 CAGATCTTTGTAAAGACTCTTACTGGAAAGACCATCACTCTAGAAGTTGAGCCATCTGAT 356390
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| ||| || ||||| ||||| ||||| || ||||| ||||| |||
Sbjct 356389 ACAATTGAAAACGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAA 356330
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || || || ||| | |||||||| | || ||| | || || || |
Sbjct 356329 CGTCTAATTTTTGCTGGGAAGCAGTTAGAAGATGGTCGCACCCTTTCTGACTACAATATT 356270
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||||||||| || |||||| | |||||| | ||||||
Sbjct 356269 CAAAAAGAATCGACTCTGCATTTAGTTTTGCGTCTCAGA 356231
Score = 100 bits (110), Expect = 7e-16
Identities = 142/200 (71%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|| || || || || || ||||| ||||| || || || ||| |||||||| || ||
Sbjct 357449 GTTAAGACACTAACTGGTAAAACAATCACACTGGAAGTAGAACCGTCAGACACAATTGAA 357390
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
|| || || ||||| |||||||||||||| || ||||| ||||| ||||| | ||
Sbjct 357389 AATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAACGTTTGATT 357330
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112
|| || || || || | |||||||| || || | | ||||| ||| | || |||||
Sbjct 357329 TTTGCTGGTAAGCAATTGGAAGATGGTAGAACATTGTCTGATTACAACATTCAGAAAGAG 357270
Query 178113 TCAACACTGCATCTTGTTTT 178132
|| || ||| | |||||
Sbjct 357269 AGTACCCTCCATTTGGTTTT 357250
Score = 98.7 bits (108), Expect = 2e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| || ||||| | || |||||||| ||||| || || || ||| ||||||
Sbjct 357230 CAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCAGAC 357171
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| || ||||| |||||||||||||| || ||||| ||||| |||
Sbjct 357170 ACAATTGAAAACGTTAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAA 357111
Query 178044 CG 178045
||
Sbjct 357110 CG 357109
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || || || |||||||| ||||| || || || ||| ||||||
Sbjct 352149 CAGATTTTTGTTAAGACACTAACTGGAAAAACCATCACACTGGAAGTAGAACCGTCAGAC 352090
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| |||||||||||||| || ||||| ||||| |||
Sbjct 352089 ACAATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAA 352030
Query 178044 CG 178045
||
Sbjct 352029 CG 352028
>seq25
Length=1883024
Score = 147 bits (162), Expect = 5e-30
Identities = 149/194 (77%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||| ||||||||||| || |||||||| |||||||| ||||| ||| |||||||
Sbjct 1512248 CAAATTTTTGTGAAAACTCTTACCGGAAAAACAATCACCCTTGAGGTTGAACCCTCAGAC 1512189
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || |||||||| ||||| ||||| || ||||| || || ||
Sbjct 1512188 ACAATCGAAAATGTAAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAG 1512129
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
| | || ||||| || || || | |||||||| | |||||| | || |||||| |
Sbjct 1512128 AGGTTAATTTTCGCTGGTAAGCAATTAGAAGATGGCCGTACTCTTTCTGACTATAACATT 1512069
Query 178104 CAAAAAGAATCAAC 178117
|| |||||||| ||
Sbjct 1512068 CAGAAAGAATCGAC 1512055
>seq428
Length=160056
Score = 132 bits (146), Expect = 1e-25
Identities = 157/213 (74%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| |||||||| ||| | || || || || ||||| | ||||| ||| || ||
Sbjct 129447 CAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCCGAT 129506
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || || ||| || || || ||||||||||| || || ||||| |||
Sbjct 129507 ACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAACAA 129566
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || || || || |||||||| | |||||||| | ||| | | ||||| ||| ||
Sbjct 129567 CGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAACATC 129626
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136
||||| ||||| ||| ||||| | || || |||
Sbjct 129627 CAAAAGGAATCGACATTGCATTTGGTCTTAAGA 129659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203669693849672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |