Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Agrilus_20planipennis_20[refseq_20GCF_5F000699045.1_202016-04-05] 3,988 sequences; 353,562,607 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq218 152 1e-31 seq25 147 5e-30 seq428 132 1e-25 >seq218 Length=661058 Score = 152 bits (168), Expect = 1e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| || ||||||||||| | || || ||| ||||| Sbjct 356677 CAAATTTTCGTGAAGACCCTCACTGGTAAAACGATCACTTTAGAAGTTGAACCATCAGAT 356618 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| ||| ||||| ||||||||||| || || || || ||||| Sbjct 356617 ACAATTGAGAATGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAGCAG 356558 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | ||||| || |||||||| || |||||||| | || || |||||||||| | Sbjct 356557 AGGTTAATCTTTGCAGGAAAACAACTGGAAGATGGTCGTACCCTCTCCGATTATAATATT 356498 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || || ||| | || | ||| | ||| Sbjct 356497 CAAAAAGAATCCACTCTCCATTTGGTACTCAGATTGAGA 356459 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || |||||||| ||||| || || || ||| |||||| Sbjct 352377 CAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCAGAC 352318 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||||||||| || ||||| ||||||||| Sbjct 352317 ACAATTGAAAACGTGAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAGCAA 352258 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| || ||| | | ||||| ||| | Sbjct 352257 CGTTTGATTTTTGCCGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGATTACAACATT 352198 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTT 178132 || ||||| || || ||| | ||||| Sbjct 352197 CAGAAAGAGAGTACCCTCCATTTGGTTTT 352169 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||||| || ||||| || ||||| || || || || || || Sbjct 356449 CAGATCTTTGTAAAGACTCTTACTGGAAAGACCATCACTCTAGAAGTTGAGCCATCTGAT 356390 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || ||||| ||||| ||||| || ||||| ||||| ||| Sbjct 356389 ACAATTGAAAACGTTAAAGCTAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAACAA 356330 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | |||||||| | || ||| | || || || | Sbjct 356329 CGTCTAATTTTTGCTGGGAAGCAGTTAGAAGATGGTCGCACCCTTTCTGACTACAATATT 356270 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||||||| || |||||| | |||||| | |||||| Sbjct 356269 CAAAAAGAATCGACTCTGCATTTAGTTTTGCGTCTCAGA 356231 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 || || || || || || ||||| ||||| || || || ||| |||||||| || || Sbjct 357449 GTTAAGACACTAACTGGTAAAACAATCACACTGGAAGTAGAACCGTCAGACACAATTGAA 357390 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 || || || ||||| |||||||||||||| || ||||| ||||| ||||| | || Sbjct 357389 AATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAACGTTTGATT 357330 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAA 178112 || || || || || | |||||||| || || | | ||||| ||| | || ||||| Sbjct 357329 TTTGCTGGTAAGCAATTGGAAGATGGTAGAACATTGTCTGATTACAACATTCAGAAAGAG 357270 Query 178113 TCAACACTGCATCTTGTTTT 178132 || || ||| | ||||| Sbjct 357269 AGTACCCTCCATTTGGTTTT 357250 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || |||||||| ||||| || || || ||| |||||| Sbjct 357230 CAAATTTTTGTTAAAACGTTAACTGGAAAAACCATCACACTGGAAGTAGAACCATCAGAC 357171 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| |||||||||||||| || ||||| ||||| ||| Sbjct 357170 ACAATTGAAAACGTTAAGGCTAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAA 357111 Query 178044 CG 178045 || Sbjct 357110 CG 357109 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || |||||||| ||||| || || || ||| |||||| Sbjct 352149 CAGATTTTTGTTAAGACACTAACTGGAAAAACCATCACACTGGAAGTAGAACCGTCAGAC 352090 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| |||||||||||||| || ||||| ||||| ||| Sbjct 352089 ACAATTGAAAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGACCAACAA 352030 Query 178044 CG 178045 || Sbjct 352029 CG 352028 >seq25 Length=1883024 Score = 147 bits (162), Expect = 5e-30 Identities = 149/194 (77%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| ||||||||||| || |||||||| |||||||| ||||| ||| ||||||| Sbjct 1512248 CAAATTTTTGTGAAAACTCTTACCGGAAAAACAATCACCCTTGAGGTTGAACCCTCAGAC 1512189 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| ||||| ||||| || ||||| || || || Sbjct 1512188 ACAATCGAAAATGTAAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAACAG 1512129 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | | || ||||| || || || | |||||||| | |||||| | || |||||| | Sbjct 1512128 AGGTTAATTTTCGCTGGTAAGCAATTAGAAGATGGCCGTACTCTTTCTGACTATAACATT 1512069 Query 178104 CAAAAAGAATCAAC 178117 || |||||||| || Sbjct 1512068 CAGAAAGAATCGAC 1512055 >seq428 Length=160056 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| ||| | || || || || ||||| | ||||| ||| || || Sbjct 129447 CAAATATTCGTGAAGACTTTAACGGGTAAGACCATCACTTTAGAGGTCGAACCGTCCGAT 129506 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || ||| || || || ||||||||||| || || ||||| ||| Sbjct 129507 ACAATCGAAAATGTGAAGGCAAAAATCCAAGATAAAGAAGGAATTCCACCTGACCAACAA 129566 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || |||||||| | |||||||| | ||| | | ||||| ||| || Sbjct 129567 CGTCTAATTTTTGCTGGAAAACAATTGGAAGATGGCCGTACTTTGTCTGATTACAACATC 129626 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 ||||| ||||| ||| ||||| | || || ||| Sbjct 129627 CAAAAGGAATCGACATTGCATTTGGTCTTAAGA 129659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203669693849672