Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq432444 104 5e-17 seq430863 89.7 1e-12 seq359798 89.7 1e-12 seq358378 87.8 4e-12 >seq432444 Length=21445 Score = 104 bits (114), Expect = 5e-17 Identities = 271/405 (67%), Gaps = 10/405 (2%) Strand=Plus/Plus Query 61011 ACTGCAAATGTAGACGCTCTTGGTGTTCTGCGTTTGTTAGACGCCGTTCGTATA-GCAGG 61069 |||||| | || |||||||| || | | || | || |||||||| | | |||| Sbjct 14367 ACTGCAGAAGTCGACGCTCTCGGCACATTAAGATTACTGGATGCCGTTCGGACATGCAGC 14426 Query 61070 TTTGAACTC----TCGAATTTGTC-AAGCATCAACATCTGAACTGTATGGAAAAGTTCAA 61124 || ||| | || ||||| | |||||||||| || || || || ||||||| || Sbjct 14427 TTGGAAAACAAAGTCAAATTTTACCAAGCATCAACGTCGGAGCTCTACGGAAAAGCCCAG 14486 Query 61125 GAAATTCCTCAAACAGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATG-GTGTTGCAAA 61183 ||| |||| ||| | |||| || |||||||| || | || |||| ||| || || Sbjct 14487 GAAGTTCCACAATCTGAAACAACACCGTTTTACCCAAGGTCTCCTTATGCGTG-CGCCAA 14545 Query 61184 ACTATACGCTTACTGGATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAA 61243 | ||||||| | ||||||| ||||||||||| | ||| ||||||| || || Sbjct 14546 ATTATACGCCTTCTGGATTGTCGTCAATTACCGCGAAGCATATAACATGTTTGCTTGCAA 14605 Query 61244 CTCGATTTGTTTCAATCACGAGAGTCCCAATAGAGGTCATCAGTTT-GTGACTCGTAAAA 61302 | |||| |||||| ||||| ||||| ||||| | ||||| ||||| || || Sbjct 14606 CGGGATTCTTTTCAACCACGAAAGTCCTCGGAGAGGAGA-GAGTTTCGTGACGCGGAAGG 14664 Query 61303 TTACGAAGGCGGTTGCAAATATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACA 61362 | || | | || ||||| |||| || | ||||||| | || ||||| Sbjct 14665 TCACTAGATCTGTGGCAAAGATTTGCTTGGGACTGATGGAATGCATTGAGCTGGGAAATC 14724 Query 61363 TAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGG 61407 | || || || | |||||||| |||| | ||||| |||||| Sbjct 14725 TCGATTCCAAGCGCGATTGGGGCCATGCCAAGGATTACGTCGAGG 14769 >seq430863 Length=7731 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||| |||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 7375 GCCCGGCTAGCTCAGTTGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGT 7316 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7315 CCCACGTTGGGC 7304 >seq359798 Length=791 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGT-GGTCGTGGGTTC 165765 || ||||| |||| |||||||||||||| ||||| ||||||| || |||||||||||| Sbjct 549 CTAGCCCGGCTAGGTCAGTCGGTAGAGCATGAGACTCTTAATCTCGTGGGTCGTGGGTTC 490 Query 165766 GAGCCCCACGATGGGC 165781 ||||||||||| |||| Sbjct 489 GAGCCCCACGAAGGGC 474 >seq358378 Length=781 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 165705 CGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGT-GGTCGTGGGT 165763 |||| ||||| |||| |||||||||||||| ||||| ||||||| || |||||||||| Sbjct 235 CGCTAGCCCGGCTAGGTCAGTCGGTAGAGCATGAGACTCTTAATCTCGTGGGTCGTGGGT 294 Query 165764 TCGAGCCCCACGATGGGC 165781 ||||||||| || ||||| Sbjct 295 TCGAGCCCCGCGTTGGGC 312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1051962289455330