Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq429159 147 2e-30 seq391541 120 3e-22 seq298504 114 1e-20 >seq429159 Length=5605 Score = 147 bits (162), Expect = 2e-30 Identities = 131/164 (80%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| ||||| ||| |||||| |||||||||||||| || |||||| | Sbjct 4208 CACGTTCTTGCCTTCTTCGCTGCCTCCGACGGGATCGTCAACGAGAACCTTGTCGAGAGA 4149 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| |||||||| || ||| | ||||| || |||||||| ||||||||| | |||||| Sbjct 4148 TTCAGCCAGGAGGTCCAAGTGACAGAGGCCCGCTGCTTCTATGGCTTTCAGGTGGCCATG 4089 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 || || |||||||| |||||||| |||||||||||| || Sbjct 4088 GAAAATGTGCACTCAGAAATGTACAGTCTCCTCATCGACACTTA 4045 Score = 141 bits (156), Expect = 1e-28 Identities = 168/224 (75%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| ||||| || ||||||||||| || ||||| |||||||||| |||||||| | Sbjct 3929 TGTTCAACGCTATGGAGACGATGCCATGTGTCAAGAAGAAGGCCGATTGGGCGCTCAAGT 3870 Query 117006 GGATCGCCGGCA-GAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 ||||| | || ||| || | ||||||||||| | | ||||| || || ||||| Sbjct 3869 GGATCT--GTCACGAGTCTGCATCTTTCGGCGAGCGAATCATCGCCTTTGCCGCTGTCGA 3812 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 ||| | ||||| || || ||||| || ||||| || ||||| ||||| || || || || Sbjct 3811 GGGGATTTTCTTCTCTGGTAGTTTTGCTGCCATTTTCTGGCTGAAGAAGCGAGGGCTTAT 3752 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||| ||| ||||||||||||| || || || || | || |||| Sbjct 3751 GCCAGGCTTGACTTTCAGCAATGAACTGATTTCACGTGATGAGG 3708 >seq391541 Length=1171 Score = 120 bits (132), Expect = 3e-22 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| ||||| |||||||| || ||||| ||| | || |||||||| Sbjct 856 AAGATGCAAATTTTCGTTAAAACCCTCACGGGTAAGACCATTACCCTAGAGGTCGAAGCT 915 Query 40747 ACCGAC---AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCG 40803 | ||| | || | || | | |||| || || | ||||||||||| |||||| | Sbjct 916 TCTGACTCGATCGAG--AATGTT-AAGGCCAAGATCCAAGACAAAGAGGGAATCCCCCCC 972 Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || || || || || |||| ||| || ||||| ||||| || | | || || ||| Sbjct 973 GATCAACAGCGTCTGATCTTCGCTGGAAAACAACTGGAGGATGGCAGAACTCTTTCTGAC 1032 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| |||||| | || ||||| | || ||||| Sbjct 1033 TACAACATCCAAAAGGAGTCGACCCTGCACTTGGTTTTGCG 1073 >seq298504 Length=516 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| ||||| ||||| || || |||||||| ||||||||| | || || || || || Sbjct 49 ATGCAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCATCC 108 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | | || | ||||| | ||||| || || || || | || ||| Sbjct 109 GACTCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAG 168 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| |||||| || ||| |||| || | || ||| | ||||||||| Sbjct 169 CAGCGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTACAAC 228 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || || | || |||||||| |||||| Sbjct 229 ATCCAAAAAGAATCTACCCTGCATCTTGTGTTG 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512433854162160