Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq298504 127 2e-24 seq391541 118 9e-22 seq418590 87.8 2e-12 seq340006 87.8 2e-12 >seq298504 Length=516 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 118524 CTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA 118583 |||||||| | || | ||||| |||||||| |||||||| || || || || | Sbjct 263 CTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCA 204 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 || || | ||| ||||| ||| ||||||| ||||||||||| || || || || |||||| Sbjct 203 TCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTG 144 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCAC 118702 ||| ||||| ||| || | || | | ||| | ||| ||| ||||| | ||| | Sbjct 143 TCTTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGC-CTCTACCTCAAGGGTGAT 85 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 118741 || ||||| ||||| || |||||||| ||||||||||| Sbjct 84 GGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCATGGC 46 >seq391541 Length=1171 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | || ||||| ||||| |||||||| || | ||| | ||| Sbjct 1071 CAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATC 1012 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| || |||||||||||| |||| |||||||| |||||||| || || ||||| ||||| Sbjct 1011 CTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTC 952 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | || || ||||| | |||| | ||| | ||| |||||||| | ||| | | Sbjct 951 TTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCT-TCGACCTCTAGGGTAATGG 893 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || || || ||||| || ||||| ||||| Sbjct 892 TCTTACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq418590 Length=2458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 133230 ACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAA 133289 || || || || |||| | ||||||| | || | || |||||| | || |||||| Sbjct 374 ACCTGGAATTCACCGGACAACACGCGTCGGGTGTAGATGTTGGACGTGTATGGCTCGAAA 315 Query 133290 GATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAA 133349 || |||||||| ||||| ||||||||||||| |||||| ||||| ||| | || || Sbjct 314 GACTCGTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATCGGCGCTAGCAGCAGC 255 Query 133350 GAGTTTCTTACGCCGT 133365 ||||||| |||||| Sbjct 254 GAGTTTCGCGCGCCGT 239 >seq340006 Length=671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| || || || || |||||||| || || || || ||||| Sbjct 69 ACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCCTCA 128 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| || |||| | ||||||||||| || || || || ||||||||| Sbjct 129 AGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGG 188 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | || | | || | ||| || ||||| | ||| | || || Sbjct 189 ATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCT-TCTACCTCAAGGGTGATTGTCTT 247 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCT 118748 || |||| || || || ||||||||||||| | |||| Sbjct 248 CCCTGTCAATGTCTTCACGAAAATCTGCATGGTTGTTTCT 287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431543686875772