Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq345983 100 3e-16 seq298504 96.9 4e-15 seq3332 96.9 4e-15 seq400848 95.1 1e-14 seq345868 95.1 1e-14 seq396777 93.3 5e-14 seq404125 86.0 7e-12 seq319120 84.2 2e-11 seq192377 84.2 2e-11 seq93567 84.2 2e-11 seq415700 82.4 9e-11 seq367240 82.4 9e-11 seq293080 82.4 9e-11 seq116798 82.4 9e-11 seq106119 82.4 9e-11 seq96563 82.4 9e-11 seq70325 82.4 9e-11 >seq345983 Length=702 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 562 TCTCCCCGGCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 503 Query 60125 ATACTACCGAGGATT 60139 || |||||||||||| Sbjct 502 ATGCTACCGAGGATT 488 >seq298504 Length=516 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030 |||||| | ||||| || || ||||| || ||||| |||| || || || | || Sbjct 261 CAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGTACGGCCATC 202 Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090 || | |||||| || ||||| |||||||||||||| || | || | | |||||||| Sbjct 201 TTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCCTTCCTTGTC 142 Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150 |||||| ||| | || | | | |||| | || || || | |||||||| Sbjct 141 TTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAAGGGTGATGGT 82 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||||| || ||||||||||| || ||||| Sbjct 81 CTTGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq3332 Length=201 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||| ||||||||||| | ||||||||||||||||||||| ||||| | |||||||||| Sbjct 200 CGGCGGGGAATCGAACTCCGGTCTCCCGCGTGACAGGCGGGGATACTGATCACTATACTA 141 Query 60131 CCGAGGATTGAAT 60143 ||||||| ||||| Sbjct 140 CCGAGGACTGAAT 128 >seq400848 Length=1404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||| | |||| ||| ||||||||| ||||||||||||||||||||| |||| |||||| Sbjct 685 TCTACCCGGCGGGGGATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGTACTGACCACT 744 Query 60125 ATACTACCGAGGATTGA 60141 ||||||||||||| ||| Sbjct 745 ATACTACCGAGGACTGA 761 >seq345868 Length=702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| |||| | |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 141 TCTCCCCGGCGGGGATTGGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 200 Query 60125 ATACTACCGAGGATT 60139 || |||||||||||| Sbjct 201 ATGCTACCGAGGATT 215 >seq396777 Length=1289 Score = 93.3 bits (102), Expect = 5e-14 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 60078 GAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1 GAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 60 Query 60138 T 60138 | Sbjct 61 T 61 >seq404125 Length=1509 Score = 86.0 bits (94), Expect = 7e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 60081 TCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 1 TCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGA 57 >seq319120 Length=582 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 60082 CGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 60140 ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct 1 CGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTG 59 >seq192377 Length=328 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 60082 CGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 60140 ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct 1 CGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTG 59 >seq93567 Length=245 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 60141 |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| ||| Sbjct 1 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTGA 59 >seq415700 Length=2169 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 60084 AACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTGA 60141 ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| ||| Sbjct 2169 AACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTGA 2112 >seq367240 Length=853 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 60084 AACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1 AACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGAT 55 >seq293080 Length=501 Score = 82.4 bits (90), Expect = 9e-11 Identities = 51/55 (93%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 60084 AACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGAT 60138 ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 1 AACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGAT 55 >seq116798 Length=260 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 60140 |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct 260 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTG 203 >seq106119 Length=253 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 186 AAAAAAGGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 245 Query 60117 TCACCACT 60124 | |||||| Sbjct 246 TGACCACT 253 >seq96563 Length=247 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 60083 GAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGATTG 60140 |||||| ||||||||||||||||||||| ||||| ||||||||||||||||||| || Sbjct 247 GAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTATACTACCGAGGACTG 190 >seq70325 Length=233 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 174 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568726275429480