Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq418590 140 3e-28 seq429159 125 6e-24 seq432080 123 2e-23 seq298504 104 2e-17 >seq418590 Length=2458 Score = 140 bits (154), Expect = 3e-28 Identities = 166/222 (75%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || || || || |||||||| ||||| || ||| |||||||| ||| | || |||||| Sbjct 374 ACCTGGAATTCACCGGACAACACGCGTCGGGTGTAGATGTTGGACGTGTATGGCTCGAAA 315 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 || || |||||||| || ||||| || ||||| || || ||||||||||| | ||| ||| Sbjct 314 GACTCGTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATCGGCGCTAGCAGCAGC 255 Query 22580 GAGTTTCTCAAGCCGTGC-TTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638 ||||||| | ||||||| | || || || |||||| | ||||||||| || Sbjct 254 GAGTTTCGCGCGCCGTGCACCTTAAGCTTGGCT-TTGAGCGCTGCCCAGTCCCAGAGCGG 196 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCC 22680 ||||||||| ||| ||||||| ||||| || | ||| || Sbjct 195 GGACGGCGTGACA---CCCCACATGTCGTACTGGAGCACTCC 157 >seq429159 Length=5605 Score = 125 bits (138), Expect = 6e-24 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 57669 GAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAAC 57728 |||||| | ||||| |||||| | || || ||||| || ||||| || || || ||| Sbjct 4226 GAGAGACACTTTATATCACACGTTCTTGCCTTCTTCGCTGCCTCCGACGGGATCGTCAAC 4167 Query 57729 GAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTAC 57788 ||||| | ||||| ||||| || || || |||||||| ||||| | ||||| || Sbjct 4166 GAGAACCTTGTCGAGAGATTCAGCCAGGAGGTCCAAGTGACAGAGGCCCGCTGCTTCTAT 4107 Query 57789 GGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACG 57848 || ||||| |||||||| ||||| ||||| ||||||||||| || |||||||| || Sbjct 4106 GGCTTTCAGGTGGCCATGGAAAATGTGCACTCAGAAATGTACAGTCTCCTCATCGACACT 4047 Query 57849 TA 57850 || Sbjct 4046 TA 4045 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 ||||||||||| || || || ||||| || |||||||| || ||| | |||| Sbjct 3930 CTGTTCAACGCTATGGAGACGATGCCATGTGTCAAGAAGAAGGCCGATTGGGCGCTCAAG 3871 Query 57939 TGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 ||||| || | || | |||| |||| | | ||||| || ||||| ||||| Sbjct 3870 TGGATCTGTCACGAGTCTGCATCTTTCGGCGAGCGAATCATCGCCTTTGCCGCTGTCGAG 3811 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || || ||||| || || || ||||| || || || ||| ||||||| || || || ||| Sbjct 3810 GGGATTTTCTTCTCTGGTAGTTTTGCTGCCATTTTCTGGCTGAAGAAGCGAGGGCTTATG 3751 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 || ||| |||| || ||||| || |||| || || || |||| Sbjct 3750 CCAGGCTTGACTTTCAGCAATGAACTGATTTCACGTGATGAGG 3708 >seq432080 Length=12955 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || || || || ||||| || ||||||| || || ||||| || |||||||| || Sbjct 11189 CATGAACAGGTCTGGGATCCAGAGGCCGTAGAAAAGGTCACGGGCACGGACCTCCTCCTT 11130 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 ||||| ||||| || | || | || || || | ||| || ||||||||||||||||| Sbjct 11129 ACCGGTATTCTTCTTGAGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTA 11070 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 | |||||||||||||| | ||| ||||||||||| Sbjct 11069 CATAGCAAACGCGCCCGGCCGCTTGTTGCCGCCCTG 11034 Score = 120 bits (132), Expect = 3e-22 Identities = 173/244 (71%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 23637 CCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCT 23696 |||| || || || | ||||| || |||||||||||||||| || ||||||||||| | Sbjct 9808 CCGACTTTGAAATGAGGGCGCACTGCCTCAGAGTGTCGTAGATCCCTTCGATGCTGTCTT 9749 Query 23697 CTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACA 23756 | | | || | || ||| || || | || | | ||||| ||||| ||||| Sbjct 9748 CGCTCATTGCCAGCAGGAAGCAGCTGGAGAGCTGTGGTCGCGGCGTTGCGGCGCTGAACA 9689 Query 23757 GTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGG 23816 | || || |||||||| || |||| | ||| | || ||||| || || ||||| | Sbjct 9688 GCGTGGGTGACGCGTGCGTGAAATATCGCTCCGATAGCAGGTTGTAAGTCTCAATGGCAG 9629 Query 23817 CATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCT 23876 ||||||||||||| || || ||||||| | || ||||||| ||||| || || | || Sbjct 9628 CATCAATGTCCTCCCCATGGATACCGACTGACACACGCATCAGCATGTGCTGCGGACGCT 9569 Query 23877 CGAC 23880 | || Sbjct 9568 CAAC 9565 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24089 AAAGAATCTTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCAAGCAACGAA 24148 ||||| | || |||||||| ||||| || || ||||| | | ||||| | | || | Sbjct 9027 AAAGATTTCTTGGTCTCCTTATGCAAGTTGGAAACGGCGATACGTGCCGCCAAAATCGCA 8968 Query 24149 TAGTCGGAATGATCGATGGTCATGGCCGCTGCCGTCTCGGCGATTAGATTGTCCAATTCA 24208 ||||| | ||| | ||||||| | ||| || ||||| || || ||||||||||| Sbjct 8967 TAGTCCGGATGTTTCGTGGTCATAGTCGCCGCGGTCTCCGCAGCCAGGTTGTCCAATTCC 8908 Query 24209 GCGGTGGTCACGCCCGAATAGATTCC-TTGATCGACGCGCACAGCTACGGATGTGGGATT 24267 |||| |||||||| | || | || ||||| ||| || | | || | || | Sbjct 8907 ACGGTCGTCACGCCAGGGTAAAGCCCGTTGAT-GACTTTCAGGGTGATGGCAGCAGGTTC 8849 Query 24268 TACAAAATTCATGTCGAGTCCGTAACATAGTTTTTCAATTCGACACTTTATCTTGT 24323 | ||| | ||||| || |||||||| ||||| | |||||| | | ||||||| Sbjct 8848 CAAAAAGTCCATGTTAAGACCGTAACAAAGTTTCTGAATTCGTGAAGTGATCTTGT 8793 >seq298504 Length=516 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || |||||||| ||||| ||||| || |||||| | || || || | || Sbjct 48 CATGCAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCATC 107 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || ||| || ||| ||||||||||| | || || || || Sbjct 108 CGACTCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGATCA 167 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || ||||| || || ||||||||||| || || || || || Sbjct 168 GCAGCGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTACAA 227 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| ||||||||||| || || ||||| || Sbjct 228 CATCCAAAAAGAATCTACCCTGCATCTTGT 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443356525548720