Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq429159 98.7 1e-15 >seq429159 Length=5605 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || |||| ||| || || || ||||| Sbjct 3746 CCTGGCATAAGCCCTCGCTTCTTCAGCCAGAAAATGGCAGCAAAACTACCAGAGAAGAAA 3805 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--- 33758 || || || || || |||||||| || | || ||| || || || || || Sbjct 3806 ATCCCCTCGACAGCGGCAAAGGCGATGATTCGCTCGCCGAAAGATGCAGACTCGTGACAG 3865 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||||||| | ||||||||||||||||| || ||||| |||||||| || || || || Sbjct 3866 ATCCACTTGAGCGCCCAATCGGCCTTCTTCTTGACACATGGCATCGTCTCCATAGCGTTG 3925 Query 33819 AAGAGATA 33826 || ||||| Sbjct 3926 AACAGATA 3933 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 ||||||| ||||| || || | ||| |||||||| | ||||| || || ||||| || Sbjct 4416 CCAATCAGCCATATCCTTGGACAAATCAACTTCTTCAGCCGTCCAGAAGGAGGCCTCAGC 4475 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAA 34155 ||||||||||||| |||||||||||| || ||||| ||||||| Sbjct 4476 TTTTTTATACATATGCCAGATGTCATGGTACTGGATGGGGAAAA 4519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 626412719454480