Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq429159 104 3e-17 >seq429159 Length=5605 Score = 104 bits (114), Expect = 3e-17 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| | ||| | ||| ||| || || | || ||||| || || ||||| | Sbjct 3708 CCTCATCACGTGAAATCAGTTCATTGCTGAAAGTCAAGCCTGGCATAAGCCCTCGCTTCT 3767 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | ||||| ||||| ||||| || || || || || ||||||| Sbjct 3768 TCAGCCAGAAAATGGCAGCAAAACTACCAGAGAAGAAAATCCCCTCGACAGCGGCAAAGG 3827 Query 42207 CAATAAGTCTCTCTCCATAACCGGCACTGTCATGT---ATCCACTTTTGAGCCCAATCGG 42263 | || | || ||| || || ||| || || |||||||| | |||||||||| Sbjct 3828 CGATGATTCGCTCGCCGAAAGATGCAGACTCGTGACAGATCCACTTGAGCGCCCAATCGG 3887 Query 42264 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 ||||||| || ||||| |||||||| || || || || || ||||| Sbjct 3888 CCTTCTTCTTGACACATGGCATCGTCTCCATAGCGTTGAACAGATA 3933 Score = 89.7 bits (98), Expect = 7e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||||||| ||||| || || | ||| |||||||| ||||||| || || || || || Sbjct 4416 CCAATCAGCCATATCCTTGGACAAATCAACTTCTTCAGCCGTCCAGAAGGAGGCCTCAGC 4475 Query 42595 CTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAA 42638 ||||||||||||| |||||| ||||| || || || ||||||| Sbjct 4476 TTTTTTATACATATGCCAGATGTCATGGTACTGGATGGGGAAAA 4519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667510929203160