Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq427463 140 5e-28 seq429159 89.7 8e-13 >seq427463 Length=4536 Score = 140 bits (154), Expect = 5e-28 Identities = 250/365 (68%), Gaps = 20/365 (5%) Strand=Plus/Plus Query 127312 CCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCG 127371 || || || || ||| || ||||| || || || | || ||||| ||| ||||||| Sbjct 3295 CCAGCAATAATAAGCTGCGGATTGAAGAGCTTTGCGTTTTCCGCAAGCTTGCCATAGTCA 3354 Query 127372 ACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCG 127431 | ||| || | ||||||||| ||||| |||||| |||||| || | ||||| || Sbjct 3355 ATGAGCCCCGAGACAGGATCCACTTTGTATGGCATGGATTCGAAGAAAACGGATGTCGCC 3414 Query 127432 GACA------------CGTTGCGGAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCG 127479 || | || || ||| |||||||| |||||||| || ||||||| || Sbjct 3415 GATATCTTCTTAGTGCCGGTGTAGAAGCCGTGCGTGAGGTGGCCGCCATCGGGCAAGTCC 3474 Query 127480 AGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATC 127539 || ||||| || | |||||||| |||||||| |||||||||||||||||||| Sbjct 3475 AGCCCCATTATGCGACCGTGCGCACCGACGATTCCGGTGTACACGGCAAAGTTGGCGGGA 3534 Query 127540 GAGCCCGAGTACGGTTGTACACACACTCCCCATT----CGGACTCGTTCAAATTGAACGC 127595 || || || ||||| || ||| || ||||||| |||| ||| | || ||||| Sbjct 3535 GATCCTGAATACGGCTGCACATTGACACCCCATTCTTCCGGA-TCG---AGATCAAACGC 3590 Query 127596 TCTGAGACATCGCTGCTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATA 127655 | ||| |||| ||| || || ||||| ||||| |||| || || || || Sbjct 3591 TTCTAGAGCGCGCTTCTGGCAAAGTAGCTCGATTTCGTCGATGTACTCATTGCCTCCGTA 3650 Query 127656 GTATC 127660 ||||| Sbjct 3651 GTATC 3655 >seq429159 Length=5605 Score = 89.7 bits (98), Expect = 8e-13 Identities = 156/226 (69%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 || || ||||| || || ||| |||| | | | || ||||| | |||| | | | Sbjct 3930 CTGTTCAACGCTATGGAGACGATGCCATGTGTCAAGAAGAAGGCCGATTGGGCGCTCAAG 3871 Query 125391 TGGATCGATGACGACAAGTCT---TCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTA 125447 |||||| | |||| |||| || | || ||| || | | || || ||||| || Sbjct 3870 TGGATCTGTCACGA---GTCTGCATCTTTCGGCGAGCGAATCATCGCCTTTGCCGCTGTC 3814 Query 125448 GAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 ||||| || ||||| || ||||||||||| ||||| || ||||| |||||||| || || Sbjct 3813 GAGGGGATTTTCTTCTCTGGTAGTTTTGCTGCCATTTTCTGGCTGAAGAAGCGAGGGCTT 3754 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 ||||| || |||| ||| || || | || || || || |||| Sbjct 3753 ATGCCAGGCTTGACTTTCAGCAATGAACTGATTTCACGTGATGAGG 3708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 737052932069160