Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq391541 149 1e-30 seq298504 129 1e-24 seq429159 84.2 5e-11 >seq391541 Length=1171 Score = 149 bits (164), Expect = 1e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || |||||||| |||||||| || || || |||||||||||| Sbjct 1055 GTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCCAGTTGTTTTCCA 996 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||| || || ||||| ||||| || || ||||| || || Sbjct 995 GCGAAGATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTA 936 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | || || ||| |||||||| ||||| |||||||| || || ||| Sbjct 935 ACATTCTCGATCGAGTCAGAAGCTTCGACCTCTAGGGTAATGGTCTTACCCGTGAGGGTT 876 Query 104543 TTTACAAATATCTGCATTTTGT 104564 || || || || ||||| |||| Sbjct 875 TTAACGAAAATTTGCATCTTGT 854 >seq298504 Length=516 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 104324 TTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTA 104383 || ||| ||| || | ||||| | || ||||| | ||||||||||| || || || Sbjct 284 TTCTTTGCTCCACCACGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTG 225 Query 104384 TAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGA 104443 |||||||| | || | || ||||| | || ||||| || || || || | ||| ||| Sbjct 224 TAGTCAGACAAGGTACGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGA 165 Query 104444 TCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTA 104503 || || || |||||||| || || || || || ||||| ||||| || | | ||| Sbjct 164 TCTGGTGGAATTCCTTCCTTGTCTTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGAT 105 Query 104504 GGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||||||| || || || ||||| || || || || ||||||||||||||||| Sbjct 104 GCCTCTACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq429159 Length=5605 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 268841 TTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTA 268900 |||||||| | ||||||| || || || | || || ||||| ||||| || || Sbjct 4217 TTTATATCACACGTTCTTGCCTTCTTCGCTGCCTCCGACGGGATCGTCAACGAGAACCTT 4158 Query 268901 GTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAG 268960 || |||| ||| | || ||||| || | | || ||| | || || || || || ||| Sbjct 4157 GTCGAGAGATTCAGCCAGGAGGTCCAAGTGACAGAGGCCCGCTGCTTCTATGGCTTTCAG 4098 Query 268961 ATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 | || || |||||| | || ||||| ||||||||||| | || || |||||||| Sbjct 4097 GTGGCCATGGAAAATGTGCACTCAGAAATGTACAGTCTCCTCATCGACACTTATAT 4042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1145018166480628