Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq391541 111 1e-19 seq418590 100 3e-16 seq432080 91.5 1e-13 seq340006 84.2 2e-11 >seq391541 Length=1171 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || || || | ||||||||||||||| |||||||| || Sbjct 1085 CCACCTCGCAGACGCAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAA 1026 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | ||||| || || || || ||| |||| | |||||| || || || || Sbjct 1025 AGAGTTCTGCCA-TCCTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGG 967 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| |||||||| ||| || ||| | | ||| | | || | | |||| Sbjct 966 GATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGAC 907 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || || ||||| |||||||| ||||| Sbjct 906 CTCTAGGGTAATGGTCTTACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq418590 Length=2458 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 145063 GACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGTTCAAA 145122 |||||| || || |||| |||||| || || || | ||| |||||| | || || || Sbjct 375 GACCTGGAATTCACCGGACAACACGCGTCGGGTGTAGATGTTGGACGTGTATGGCTCGAA 316 Query 145123 AGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAA 145182 ||||||||| || || ||||| || || |||| || || ||||| ||| | || | Sbjct 315 AGACTCGTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATCGGCGCTAGCAGCAG 256 Query 145183 TGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGA 145242 || || ||| ||||||| ||| | | | || |||| |||| ||||| |||| Sbjct 255 CGAGTTTCGCGCGCCGTGCACCTTAAGCTTGGCTTTGAGCGCTGCCCAGTCCCAGAGCGG 196 Query 145243 AGTCGGCCTCACGTCCCACATGTCGTACTG 145272 | |||| | || |||||||||||||||| Sbjct 195 GGACGGCGTGACACCCCACATGTCGTACTG 166 >seq432080 Length=12955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 145331 GCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTG 145390 || ||||||||||||||||||| || || | || | |||||| || ||| ||||| Sbjct 12571 GCCAGCTCGCAACTCGCCTCCATTGCAGCGTAGTACAGTGTCTCAAAGATCTGCGTGTTG 12512 Query 145391 AGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGC 145450 || | || || ||||||||| |||||||||||| || | || || ||||| || Sbjct 12511 AGTTTCTGGGCCTCCTCGCTCTCGAACGGCATGCGCATGAGGATGAAGGCGTCGGCAAGG 12452 Query 145451 CCCTGTATTCCCACGCCGATGGGCCGATGT 145480 ||||| || || | || |||||||| ||| Sbjct 12451 CCCTGGATGCCAATTCCAATGGGCCGGTGT 12422 >seq340006 Length=671 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | ||||| ||||| || |||||||| || || || || | Sbjct 63 CGAAGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCG 122 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || || |||| || |||||||| || || ||||||||||| ||| Sbjct 123 TCCTCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTG 182 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || || | | ||| | | ||| | | || | || | ||| | Sbjct 183 TCTTGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATT 242 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || || || || | || || ||||||||||||||| Sbjct 243 GTCTTCCCTGTCAATGTCTTCACGAAAATCTGCATG 278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469461033901440