Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq431887 125 5e-24 seq149030 91.5 1e-13 seq340006 87.8 1e-12 >seq431887 Length=11315 Score = 125 bits (138), Expect = 5e-24 Identities = 125/162 (77%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 6157 CCACGATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAA 6216 || ||||||||| | | ||||| || || ||| ||||| |||||||||||||| | Sbjct 1401 CCGCGATGGGGAGCGTCAACGTCAACCGGGCGGTGAGCGACGCCTTCTACCGCTACAAGA 1460 Query 6217 TGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCA 6276 ||||| | ||| |||||||||||||| ||||| ||||| || || || ||||| |||| Sbjct 1461 TGCCGAGGATCATGGCCAAGGTCGAGGGGAAGGGCAACGGCATCAAGACTGTCATCGTCA 1520 Query 6277 ACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCT 6318 ||||| |||||||| ||||| |||| | ||||| |||| Sbjct 1521 ACATGATCGAAGTCGCCAAGGCCATCGGCAGACCTGCTACCT 1562 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || |||| ||||| || || || ||||||||||| |||||||| || ||||| Sbjct 1811 CCCACCAAATTCTTCGGCTGTGAGCTGGGCGCTCAGACCCAGTTTGACTTTAAGAACGAC 1870 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGG 6436 || |||||||| || || |||||| | ||||||||||||||||| | | ||||| Sbjct 1871 CGGTTCATCGTGAATGGCTCGCATGAGGCTGCCAAGCTGCAGGACCTGTTGGACGG 1926 >seq149030 Length=285 Score = 91.5 bits (100), Expect = 1e-13 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCG 19999 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 233 CTCTCTCTTCAAAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCG 285 >seq340006 Length=671 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||| || || || ||||| || || ||||| |||||||| ||| |||| || Sbjct 69 ACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCCTCA 128 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || ||||||||||| || | || || ||||| | ||||| ||||| ||||| Sbjct 129 AGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGG 188 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||| |||| | | ||| | ||| || || | || || || || Sbjct 189 ATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTCTTC 248 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| || |||||||| ||||||||| || Sbjct 249 CCTGTCAATGTCTTCACGAAAATCTGCATGGTT 281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333181698647021