Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq185751 187 3e-42 seq429159 113 6e-20 >seq185751 Length=321 Score = 187 bits (206), Expect = 3e-42 Identities = 144/166 (87%), Gaps = 5/166 (3%) Strand=Plus/Minus Query 33367 AAAGTAAAGGTAAAGGTTCCCCA--CACATATGTGCTAGTCGTTTCCAACTCTAGGGTGC 33424 || ||||||||||||||||||| ||||| ||||| |||||| ||| ||||||||| || Sbjct 163 AAGGTAAAGGTAAAGGTTCCCCCTGCACATGTGTGCCAGTCGTGTCCGACTCTAGGG-GC 105 Query 33425 GGTGCTCATCTCCGTTTCAAAGCCGAAGAGCCAGCGCTTGTCCGAGGACCTCTCCGTGGT 33484 |||||||||||||||||| |||||||||||||||||| ||||| | ||| |||||||| Sbjct 104 GGTGCTCATCTCCGTTTCTAAGCCGAAGAGCCAGCGC-TGTCCTAAGACGCTTCCGTGGT 46 Query 33485 CATGTGGCCGGCATGACTAGACACCAAAGGCGCACGGAACGCTGTT 33530 |||||||||||||||||||||| | ||||||||||||||||| Sbjct 45 CATGTGGCCGGCATGACTAGAC-GCTTTCGCGCACGGAACGCTGTT 1 >seq429159 Length=5605 Score = 113 bits (124), Expect = 6e-20 Identities = 138/188 (73%), Gaps = 3/188 (2%) Strand=Plus/Plus Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || || ||||| || ||||| || |||| ||||| ||||| |||||| Sbjct 3746 CCTGGCATAAGCCCTCGCTTCTTCAGCCAGAAAATGGCAGCAAAACTACCAGAGAAGAAA 3805 Query 32781 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT--- 32837 || || || || || |||||||| || | || ||| || || || || || Sbjct 3806 ATCCCCTCGACAGCGGCAAAGGCGATGATTCGCTCGCCGAAAGATGCAGACTCGTGACAG 3865 Query 32838 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 32897 |||||||| | ||||||||||||||||| || ||||| ||||| ||||| ||||| || Sbjct 3866 ATCCACTTGAGCGCCCAATCGGCCTTCTTCTTGACACATGGCATCGTCTCCATAGCGTTG 3925 Query 32898 AAGAGATA 32905 || ||||| Sbjct 3926 AACAGATA 3933 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 33131 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33190 ||||||| ||||| || || | ||| |||||||| | ||||| || || ||||| || Sbjct 4416 CCAATCAGCCATATCCTTGGACAAATCAACTTCTTCAGCCGTCCAGAAGGAGGCCTCAGC 4475 Query 33191 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGG 33250 ||||||||||||| |||||||||||| || || || || |||| || || | ||| Sbjct 4476 TTTTTTATACATATGCCAGATGTCATGGTACTGGATGGGGAAAACTACGAAGCGTCGTGG 4535 Query 33251 ATTTT 33255 ||||| Sbjct 4536 ATTTT 4540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 630206498283600