Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq298504 114 1e-20 seq54643 86.0 5e-12 >seq298504 Length=516 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||||||||| |||| || || ||||||| | || || ||| | || Sbjct 49 ATGCAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCATCC 108 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | || ||| |||| |||||| ||||| ||||| |||||||| || || Sbjct 109 GACTCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAG 168 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || || ||||||| || || || || ||||| Sbjct 169 CAGCGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTACAAC 228 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 || ||||||||||| || || ||| | ||| | ||||| Sbjct 229 ATCCAAAAAGAATCTACCCTGCATCTTGTGTTGAGGCT 266 >seq54643 Length=225 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| ||||||| || |||| ||| | ||||| ||| | ||| Sbjct 127 ATGCAGATCTTTGTGAAGACTCTGACCGGCAAGACCATTACACTTGAAGTTGAGGCTTCT 68 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| | |||||| ||||| || ||| ||||||||||| || || || ||||| Sbjct 67 GACTCGATCGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCAGACCAG 8 Query 25119 CAGCG 25123 ||||| Sbjct 7 CAGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431043935018165