Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq391541 118 9e-22 seq298504 114 1e-20 seq385119 82.4 6e-11 seq340006 82.4 6e-11 >seq391541 Length=1171 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||||||||| |||||||| | || ||||| || | || || || || ||| | Sbjct 856 AAGATGCAAATTTTCGTTAAAACCCTCACGGGTAAGACCATTACCCTAGAGGTCGAAGCT 915 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || | | || || | || || || |||||||| ||||| || || |||||| Sbjct 916 TCTGACTCGATCGAGAATGTTAAGGCCAAGATCCAAGACAAAGAGGGAATCCCCCCCGAT 975 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 ||||| ||||| || || || || ||||| | |||||| | | || | || || ||| Sbjct 976 CAACAGCGTCTGATCTTCGCTGGAAAACAACTGGAGGATGGCAGAACTCTTTCTGACTAC 1035 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| ||||| || || ||| | || || |||||||| |||| || || Sbjct 1036 AACATCCAAAAGGAGTCGACCCTGCACTTGGTTTTGCGTCTGCGAGGTGG 1085 >seq298504 Length=516 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || | || Sbjct 49 ATGCAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCATCC 108 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || | ||| ||||| ||||||||||| || |||||||| ||||| Sbjct 109 GACTCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAG 168 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || || || ||||| || ||| ||| ||| | || || |||||| Sbjct 169 CAGCGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTACAAC 228 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTG 22431 || ||||||||||| ||| | ||| | || ||| Sbjct 229 ATCCAAAAAGAATCTACCCTGCATCTTGTGTTG 261 >seq385119 Length=1061 Score = 82.4 bits (90), Expect = 6e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || || || || || |||| |||||||| || | | Sbjct 145 ATGCAAATCTTTGTGAAGACATTGACGGGGAAGACCATCACCCTTGAAGTTGAGGCTTCA 86 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | || || |||| || |||||||| ||||| || || || || ||||| Sbjct 85 GACTCGATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATCCCCCCAGATCAG 26 Query 22339 CAACGTCTTATATTTGCCGGCAAAC 22363 ||||||||||| || || ||||||| Sbjct 25 CAACGTCTTATCTTCGCAGGCAAAC 1 >seq340006 Length=671 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || || || || || || |||| ||||| || ||| | | Sbjct 277 ATGCAGATTTTCGTGAAGACATTGACAGGGAAGACAATCACCCTTGAGGTAGAAGCTTCT 218 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || | | ||| || || ||||||||||| || || || || ||||| Sbjct 217 GATTCGATTGAGAACGTGAAAGCCAAGATCCAAGACAAGGAAGGAATCCCCCCAGATCAG 158 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || |||||||| || ||| | ||||| || || | || || |||||| Sbjct 157 CAGCGATTGATCTTTGCCGGAAAGCAGCTTGAGGACGGACGAACATTGTCTGACTACAAC 98 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| || | || || || | || | || |||||| Sbjct 97 ATCCAGAAGGAATCGACACTCCACTTGGTCCTTCGGCTCCGTGGAGGT 50 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417515620401415