Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq430863 91.5 3e-13 seq391394 91.5 3e-13 seq359798 87.8 4e-12 seq358378 87.8 4e-12 seq163352 86.0 1e-11 seq163351 86.0 1e-11 seq317309 84.2 4e-11 >seq430863 Length=7731 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| ||||||||| |||||||| | ||||||||||||| | ||||||||||||||| Sbjct 7376 AGCCCGGCTAGCTCAGTTGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 7317 Query 142563 CCCCACATCGGGC 142575 ||||| | |||| Sbjct 7316 TCCCACGTTGGGC 7304 >seq391394 Length=1168 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||||||||| ||| ||||||||||||||||||||||||||| | |||||||| Sbjct 170 TGTCCCTGTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGTGGGTTCGAT 111 Query 142112 CCCCGCCAGAGACGC 142126 |||| |||| || || Sbjct 110 CCCCACCAGGGATGC 96 >seq359798 Length=791 Score = 87.8 bits (96), Expect = 4e-12 Identities = 61/68 (90%), Gaps = 1/68 (1%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGT-GGTCGTGGGTTCG 142560 |||||||| ||| |||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 548 TAGCCCGGCTAGGTCAGTCGGTAGAGCATGAGACTCTTAATCTCGTGGGTCGTGGGTTCG 489 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 488 AGCCCCAC 481 >seq358378 Length=781 Score = 87.8 bits (96), Expect = 4e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGT-GGTCGTGGGTTCG 142560 |||||||| ||| |||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 238 TAGCCCGGCTAGGTCAGTCGGTAGAGCATGAGACTCTTAATCTCGTGGGTCGTGGGTTCG 297 Query 142561 AGCCCCACATCGGGC 142575 |||||| | | |||| Sbjct 298 AGCCCCGCGTTGGGC 312 >seq163352 Length=298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | ||||||| ||||||| || | ||||| ||||||| | ||||||||||||||| Sbjct 214 AGCCCAGCTAGCTCAATCGGTAGGGCACGAGACTATTAATCTCGGGGTCGTGGGTTCGAG 155 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| | ||||| || Sbjct 154 CCCCACTTTGGGCACAA 138 >seq163351 Length=298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| ||||||||| ||||||| || | ||||| ||||||| | | ||||||||||||| Sbjct 214 AGCCCAGTTAGCTCAATCGGTAGGGCACGAGACTATTAATCTCGGGATCGTGGGTTCGAG 155 Query 142563 CCCCACATCGGGCAGAA 142579 |||||| | ||||| || Sbjct 154 CCCCACTTTGGGCACAA 138 >seq317309 Length=575 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||| Sbjct 517 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGA 575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1022141257254931