Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq298504 163 5e-35 seq391541 154 3e-32 seq340006 125 1e-23 seq432444 107 4e-18 seq385119 96.9 6e-15 seq37324 87.8 3e-12 >seq298504 Length=516 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || | ||| || | || || || || |||||||||||||| || || || Sbjct 276 TCCACCACGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGA 217 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | || | |||||||| |||||||| || ||||| ||||||| || || || ||||| Sbjct 216 CAAGGTACGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGG 157 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| |||||||||||||| || || || || || ||| || | ||| | || ||||| Sbjct 156 AATTCCTTCCTTGTCTTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTAC 97 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||| |||||||| || ||||||||||| Sbjct 96 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq391541 Length=1171 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || ||||| |||||||| || || ||||| ||||||||||| || || || Sbjct 1086 TCCACCTCGCAGACGCAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGA 1027 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || || ||||| || | || || || ||||| || || | ||||| ||||| || Sbjct 1026 AAGAGTTCTGCCATCCTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGG 967 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || || |||||||| ||||| ||||| || |||||| | ||| | | ||| || Sbjct 966 GATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGAC 907 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| || ||||| || ||||| Sbjct 906 CTCTAGGGTAATGGTCTTACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq340006 Length=671 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| || || || || || |||||||| || || || Sbjct 51 CCTCCACGGAGCCGAAGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGAC 110 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | || || || | |||||| ||||| || || | || || || || || || Sbjct 111 AATGTTCGTCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGG 170 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| || || ||| ||| || | || | | |||||| Sbjct 171 ATTCCTTCCTTGTCTTGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACC 230 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || || || | ||||| ||||| |||||||| Sbjct 231 TCAAGGGTGATTGTCTTCCCTGTCAATGTCTTCACGAAAATCTGCAT 277 >seq432444 Length=21445 Score = 107 bits (118), Expect = 4e-18 Identities = 169/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 268366 AGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425 ||||| || || |||||||| |||| || | |||| || ||||||||||| || || Sbjct 14669 AGTGACCTTCCGCGTCACGAAACTCTCTCCTCTCCGAGGACTTTCGTGGTTGAAAAGAAT 14610 Query 268426 GCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485 |||||||| || |||||| |||||| || ||||| || ||||| ||||| | || | Sbjct 14609 CCCGTTGCAAGCAAACATGTTATATGCTTCGCGGTAATTGACGACAATCCAGAAGGCGTA 14550 Query 268486 CATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGAT 268545 | || || || || ||||| | ||| | || || || || ||| || | Sbjct 14549 TAATTTGGCGCACGCATAAGGAGACCTTGGGTAAAACGGTGTTGTTTCAGATTGTGGAAC 14490 Query 268546 TTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTG---TTGTTTT 268602 ||| || |||| || ||||||| || || ||||||||||| || |||| ||||||| Sbjct 14489 TTCCTGGGCTTTTCCGTAGAGCTCCGACGTTGATGCTTGGTA-AAATTTGACTTTGTTTT 14431 >seq385119 Length=1061 Score = 96.9 bits (106), Expect = 6e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || ||||| || || | ||| || || || || || |||||||| ||||||||||| Sbjct 3 TTGCCTGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATCTTA 62 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 |||||||| ||| || | ||||| | || ||||| | ||||||||| || ||||| Sbjct 63 GCCTTGACATTCTCAATCGAGTCTGAAGCCTCAACTTCAAGGGTGATGGTCTTCCCCGTC 122 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 | ||||| || || || ||||| Sbjct 123 AATGTCTTCACAAAGATTTGCAT 145 >seq37324 Length=216 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | |||||||| || || || || ||||||||||| || ||||| Sbjct 130 CCTCCACGGAGTCGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 71 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | ||| | |||||||| |||||||| || || || || | || || ||||| || || Sbjct 70 AATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGG 11 Query 68355 ATGCCTTC 68362 || ||||| Sbjct 10 ATACCTTC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 916639982582520