Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq431548 102 2e-18 seq431104 98.7 2e-17 seq220397 80.6 7e-12 seq220396 80.6 7e-12 seq426274 78.8 2e-11 >seq431548 Length=9573 Score = 102 bits (112), Expect = 2e-18 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || ||||| ||||| ||||| ||||||| | | |||| |||| || |||||| Sbjct 8722 TGCACTTTCCACAAGTACGGAGCTTCGGGTACGATTCAAAAGCACGACTCGCTGTGCATC 8663 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTG 3486 || ||| |||| | ||||||||||||| |||||| ||||||||||||||||||| | | Sbjct 8662 CTGCCGTTGAACATCGTCAACGAGAAGACCTACATCTTCCTCTGGTTCTGGTTCTTCATC 8603 Query 3487 CTAGCCATCAT 3497 || ||||| || Sbjct 8602 CTCGCCATGAT 8592 >seq431104 Length=8236 Score = 98.7 bits (108), Expect = 2e-17 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 ||||||||| || |||||||| | | ||| ||||| || ||||| |||||||||| Sbjct 7081 ACCCCATGAGCCGCGTCTTTCCCAAGGTGACTAAGTGTACCTTCCACAAGTACGGTCCTT 7140 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 | || || | | || | ||| || |||||| || | || |||| | |||||||||| Sbjct 7141 CTGGTACCGTCCAGAAGTTCGACGGCCTCTGCGTCTTGCCTCTGAACATCGTCAACGAGA 7200 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||| ||| | ||||| ||||| |||||| Sbjct 7201 AGATTTACGTGTTCCTGTGGTTTTGGTTC 7229 >seq220397 Length=363 Score = 80.6 bits (88), Expect = 7e-12 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTC-CTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCA 3424 ||||||||| |||||||||| || |||| || |||| |||| | | |||| Sbjct 137 ATGTACTTTCTACAAATACGGCGTCTCCGGGGAAGTTGAGAAAC-ACGACGCCGTGTGCA 195 Query 3425 TCCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 || | || ||| || |||||||||||||||||||| |||||||||||||||||| Sbjct 196 TCTTGCCTCTGAATGTAGTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTTC 251 >seq220396 Length=363 Score = 80.6 bits (88), Expect = 7e-12 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||| ||||| |||||||||| || ||| | || || |||| | | ||||| Sbjct 137 ATGCACTTTCTACAAATACGGCGTCTCCGGCGAAGTTGAGAAACACGACGCCGTGTGCAT 196 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTT 3479 ||| || ||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 197 CCTGCCTCTTAACGTAGTCAACGAGAAGATCTACATCTTCCTCTGGTTCTGGTT 250 >seq426274 Length=4045 Score = 78.8 bits (86), Expect = 2e-11 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||| || || ||||| |||||||| || || || | || || |||| | || ||||| Sbjct 3749 ATGCACGTTCCACAAGTACGGTCCATCAGGGTCGATCCAAGACCACGACGCTCTGTGCAT 3808 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGT 3478 | || |||||| || ||||||||||||||| |||||||||||||||| Sbjct 3809 AATGGCGCTGAACGTCGTTAACGAGAAGATCTACGCGTTCCTCTGGTTCTGGT 3861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12420964978500