Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq298504 154 3e-32 seq340006 132 1e-25 seq391541 113 1e-19 seq432444 109 1e-18 seq54643 91.5 3e-13 seq385119 87.8 4e-12 >seq298504 Length=516 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| || | || ||||| | || |||||||||||| || ||||| | Sbjct 276 TCCACCACGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGA 217 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || || || ||||| || || ||||| |||||||| || ||||| ||| ||| Sbjct 216 CAAGGTACGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGG 157 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || || ||||||||||||||||| || || || || ||| | ||||| Sbjct 156 AATTCCTTCCTTGTCTTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTAC 97 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 96 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCAT 49 >seq340006 Length=671 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || ||||| || ||||| | | || |||||||| || | || ||||| || || Sbjct 86 TTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCCTCAAGCTGCTTTCCGGCAAA 145 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| ||||| ||| |||||| |||||||| || || ||||| || |||||||| Sbjct 146 GATCAATCGCTGCTGA---TCTGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTCAC 202 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || || ||||| | |||||| || || ||||| |||||||| |||| ||||| Sbjct 203 GTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTCTTCCCTGTCAATGTCTT 262 Query 288459 GACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 263 CACGAAAATCTGCAT 277 >seq391541 Length=1171 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||| | || || | || || || | ||||||||| |||||| Sbjct 1049 TCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATCCTCCAGTTGTTTTCCAGCGAAG 990 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||||||| |||||||| ||||| || ||||| || || || || || Sbjct 989 ATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTC 930 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || || || | ||| || || || || || ||||| || || || || || ||| Sbjct 929 TCGATCGAGTCAGAAGCTTCGACCTCTAGGGTAATGGTCTTACCCGTGAGGGTTTTAACG 870 Query 288463 AATATCTGCATTATGTT 288479 || || ||||| |||| Sbjct 869 AAAATTTGCATCTTGTT 853 >seq432444 Length=21445 Score = 109 bits (120), Expect = 1e-18 Identities = 271/403 (67%), Gaps = 10/403 (2%) Strand=Plus/Plus Query 72339 ACTGCAAACGTAGATGCTCTCGGTGTTTTGCGTTTACTAGACGCCGTTCGTATAT-CGGG 72397 |||||| | || || |||||||| || | ||||| || |||||||| | || | | Sbjct 14367 ACTGCAGAAGTCGACGCTCTCGGCACATTAAGATTACTGGATGCCGTTCGGACATGCAGC 14426 Query 72398 TGTCAACTC----TCGAATTTG-CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAA 72452 | || | || ||||| |||||| || |||| ||| | || ||||||| || Sbjct 14427 TTGGAAAACAAAGTCAAATTTTACCAAGCATCAACGTCGGAGCTCTACGGAAAAGCCCAG 14486 Query 72453 GAAATTCCTCAGACGGAAAATACTCCGTTTTATCCTCGAAGCCCTTACG-GTGTTGCAAA 72511 ||| |||| || | |||| || |||||||| || | ||||| | ||| |||| Sbjct 14487 GAAGTTCCACAATCTGAAACAACACCGTTTTACCCAAGGTCTCCTTATGCGTGCGCCAAA 14546 Query 72512 GTTGTACGCTTATTGGATCTGTAAA-AATTACCGTGAGTCGTATAACATGTATGTATGCA 72570 || ||||| | ||||| ||| |||||||| || | |||||||||| || |||| Sbjct 14547 -TTATACGCCTTCTGGAT-TGTCGTCAATTACCGCGAAGCATATAACATGTTTGCTTGCA 14604 Query 72571 ACTCGATTTGTTTCAATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAA 72630 || |||| |||||| ||||| ||||| ||||| | |||||||| || || Sbjct 14605 ACGGGATTCTTTTCAACCACGAAAGTCCTCGGAGAGGAGAGAGTTTCGTGACGCGGAAGG 14664 Query 72631 TCACGAAGGTGGTCGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATA 72690 |||| | || || || |||| | || | ||||||| | || || ||| Sbjct 14665 TCACTAGATCTGTGGCAAAGATTTGCTTGGGACTGATGGAATGCATTGAGCTGGGAAATC 14724 Query 72691 TAGATGCCAAAAGAGATTGGGGATATGCGAAGGATTACGTAGA 72733 | ||| |||| | |||||||| |||| ||||||||||| || Sbjct 14725 TCGATTCCAAGCGCGATTGGGGCCATGCCAAGGATTACGTCGA 14767 >seq54643 Length=225 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| |||||||| |||||||| || || |||||||| || || || || | || Sbjct 18 GGGATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGAGTCAGAAGCCTCA 77 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||| |||||||||||||| || || |||||||| Sbjct 78 ACTTCAAGTGTAATGGTCTTGCCGGTCAGAGTCTTCACAAAGATCTGCAT 127 >seq385119 Length=1061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/148 (74%), Gaps = 6/148 (4%) Strand=Plus/Plus Query 288329 GTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGA 288385 |||| ||||||||||| ||||| || || |||| ||||||||||| ||||| || | Sbjct 1 GTTTGCCTGCGAAGATAAGACGTTGCTG---ATCTGGGGGGATTCCTTCCTTATCTTGAA 57 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | || || || || || || || || || | || ||||| || ||||| ||||||| Sbjct 58 TCTTAGCCTTGACATTCTCAATCGAGTCTGAAGCCTCAACTTCAAGGGTGATGGTCTTCC 117 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 | |||| ||||| || || || ||||| Sbjct 118 CCGTCAATGTCTTCACAAAGATTTGCAT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1173117591763898