Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq298504 116 3e-21 seq391541 98.7 9e-16 seq418590 87.8 2e-12 >seq298504 Length=516 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||||||||| || | | |||||| | ||| | ||||| |||||||| || ||||| || Sbjct 279 TGCTCCACCACGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTC 220 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || || ||| || | ||| ||||| ||| |||| | |||||||||||| || Sbjct 219 AGACAAGGTACGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGG 160 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || || |||||||| ||||||| || | | || | | ||| | ||| Sbjct 159 TGGAATTCCTTCCTTGTCTTGGATTTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTC 100 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGC 127116 || || | ||| | || ||||| ||||| || |||||||| ||||||||||| Sbjct 99 TACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTGCATGGC 46 >seq391541 Length=1171 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 126885 CTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGC 126944 ||||||| || | ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 1087 CTCCACCTCGCAGACGCAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAG 1028 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | || | ||| || || |||||||||||| |||||| ||||| |||||||| | Sbjct 1027 AAAGAGTTCTGCCATCCTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGG 968 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 | || ||||| ||||| ||| || ||| | | |||| | ||| | | |||| Sbjct 967 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGA 908 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | ||| | || || || || || ||||| || ||||| ||||| Sbjct 907 CCTCTAGGGTAATGGTCTTACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq418590 Length=2458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/139 (75%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 146071 ACCTGAAACTCGCCGGCGAGAACGCGCCTCAGAT--ACACGTTGCTGGTGAACGGCTCGA 146128 ||||| || || |||| | ||| ||| || | | | | |||| ||| | ||||||| Sbjct 374 ACCTGGAATTCACCGG--ACAACACGCGTCGGGTGTAGATGTTGGACGTGTATGGCTCGA 317 Query 146129 ACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCA 146188 | ||||||||||| ||||| ||||||||||||| || || ||||| ||| | ||||| Sbjct 316 AAGACTCGTTGTTTCCGAGGATCTGCGCCGTCGACGCCGTTGGCATCGGCGCTAGCAGCA 257 Query 146189 AAGAGTTTCTCACGCCGTG 146207 ||||||| | ||||||| Sbjct 256 GCGAGTTTCGCGCGCCGTG 238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472930177293840