Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq391541 134 3e-26 seq298504 131 4e-25 seq340006 116 9e-21 seq37324 105 2e-17 seq407459 95.1 3e-14 >seq391541 Length=1171 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | || || | ||| || |||||||||||||||| ||||||||||| | ||| Sbjct 1080 TCGCAGACGCAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGT 1021 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| ||||| || ||||| |||||||| |||||||| || || || ||||| Sbjct 1020 TCTGCCATCCTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGGATTCC 961 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| ||| || |||| | ||| | | ||| || || | Sbjct 960 CTCTTTGTCTTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGACCTCTAG 901 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||||||||| ||||| || |||||||| Sbjct 900 GGTAATGGTCTTACCCGTGAGGGTTTTAACGAAAATTTG 862 >seq298504 Length=516 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || |||| ||||| || || || || || ||||||| ||||||||||| ||| || Sbjct 269 CGGAGCCTCAACACAAGATGCAGGGTAGATTCTTTTTGGATGTTGTAGTCAGACAAGGTA 210 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||||||| ||||||||||| |||||||| || || ||||||| Sbjct 209 CGGCCATCTTCCAACTGCTTTCCCGCGAAGATGAGTCGCTGCTGATCTGGTGGAATTCCT 150 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || || || ||| || ||||| || | | ||| | || ||||| || | Sbjct 149 TCCTTGTCTTGGAT-TTTCGCTTTCACATTCTCAATTGAGTCGGATGCCTCTACCTCAAG 91 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || ||||| || || Sbjct 90 GGTGATGGTCTTGCCCGTCAGGGTCTTTACAAATATCTG 52 Score = 93.3 bits (102), Expect = 1e-13 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 200934 ACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCA 200993 ||| |||||||| |||||||||||||||||||| | || ||| | || |||||| |||| Sbjct 174 ACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTACAACATCCA 233 Query 200994 GAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 ||||| ||||| || || ||||| ||||| || || Sbjct 234 AAAAGAATCTACCCTGCATCTTGTGTTGAGGCTCCG 269 >seq340006 Length=671 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||| ||||| |||| ||||||||||| ||| || | ||| || Sbjct 66 AGGACCAAGTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCC 125 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||| ||||| | |||||||| || || |||||||| || Sbjct 126 TCAAGCTGCTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCT 185 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | | || | | |||||| || | ||||| ||| Sbjct 186 TGGATCTTGGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTC 245 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||| ||||| || Sbjct 246 TTCCCTGTCAATGTCTTCACGAAAATCTG 274 >seq37324 Length=216 Score = 105 bits (116), Expect = 2e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || |||| ||||| | ||||||||| || |||||||||| ||||||||| | ||| || Sbjct 124 CGGAGTCGGAGGACCAAGTGGAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAATGTA 65 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| ||||||||| || ||||| | ||||||||||| || || ||| Sbjct 64 CGACCATCTTCCAACTGCTTTCCAGCAAAGATCAATCGCTGCTGGTCTGGGGGGATACCT 5 Query 199529 TCT 199531 ||| Sbjct 4 TCT 2 >seq407459 Length=1649 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | ||||| | ||| ||||| ||||||||||| | ||| ||||||| | ||| Sbjct 107 TCGAAGACGGAGGACCAAGTGAAGAGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGT 48 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTG 199512 | |||||||||||||| || || |||||||| ||||| ||||| Sbjct 47 TCGGCCATCTTCCAGCTGTTTGCCTGCGAAGATAAGACGTTGCTG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1172388852421897