Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq391541 147 2e-30 seq429159 138 1e-27 seq298504 127 2e-24 >seq391541 Length=1171 Score = 147 bits (162), Expect = 2e-30 Identities = 176/236 (75%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 || || |||||||| ||||| ||||| |||||||| || ||||| ||| | || ||||| Sbjct 853 AACAAGATGCAAATTTTCGTTAAAACCCTCACGGGTAAGACCATTACCCTAGAGGTCGAA 912 Query 38298 GCCACCGAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 || | ||| | || | || | |||| | || |||| |||||||||||||| ||| Sbjct 913 GCTTCTGACTCGATCGAG--AATG-TTAAGGCCAAGATCCAAGACAAAGAGGGAATCCCC 969 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 |||| |||||||| || || | ||| || ||||| ||||| || | | || || Sbjct 970 CCCGATCAACAGCGTCTGATCTTCGCTGGAAAACAACTGGAGGATGGCAGAACTCTTTCT 1029 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||||||||| |||| ||||| ||||| ||||| || |||| || Sbjct 1030 GACTACAACATCCAAAAGGAGTCGACCCTGCACTTGGTTTTGCGTCTGCGAGGTGG 1085 >seq429159 Length=5605 Score = 138 bits (152), Expect = 1e-27 Identities = 166/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || | ||||| ||||| ||||||||||||||||| ||||| || || || || | Sbjct 3708 CCTCATCACGTGAAATCAGTTCATTGCTGAAAGTCAAGCCTGGCATAAGCCCTCGCTTCT 3767 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || ||||| || ||||| || || ||||| | |||||||| || || || | Sbjct 3768 TCAGCCAGAAAATGGCAGCAAAACTACCAGAGAAGAAAATCCCCTCGACAGCGGCAAAGG 3827 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC-GATCCAGCGCAGCGCCCATTCG 133095 | | | ||||||||||| | || | | || | |||||| |||||||| ||| Sbjct 3828 CGATGATTCGCTCGCCGAAAGATGCAGACTCG-TGACAGATCCACTTGAGCGCCCAATCG 3886 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACA 133138 ||||| | ||||| || |||||||| || || ||||| |||| Sbjct 3887 GCCTTCTTCTTGACACATGGCATCGTCTCCATAGCGTTGAACA 3929 Score = 116 bits (128), Expect = 4e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 133168 TAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAG 133227 || |||||||||||| |||||||| ||||| || || |||||||| | |||||| Sbjct 4045 TAAGTGTCGATGAGGAGACTGTACATTTCTGAGTGCACATTTTCCATGGCCACCTGAAAG 4104 Query 133228 CCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTT 133287 || || ||||| || ||||| ||| || || || || ||| | |||||| || || Sbjct 4105 CCATAGAAGCAGCGGGCCTCTGTCACTTGGACCTCCTGGCTGAATCTCTCGACAAGGTTC 4164 Query 133288 TCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTG 133331 ||||||||||| |||||| ||| ||||| ||||| || ||||| Sbjct 4165 TCGTTGACGATCCCGTCGGAGGCAGCGAAGAAGGCAAGAACGTG 4208 >seq298504 Length=516 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| ||||| || || |||||||| ||||||||| | || || ||||| || Sbjct 49 ATGCAGATATTTGTAAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTAGAGGCATCC 108 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | | |||| ||||||| ||||| || |||||||| | || || Sbjct 109 GACTCAATTGAGAATGTGAAAGCGAAAATCCAAGACAAGGAAGGAATTCCACCAGATCAG 168 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | |||||| || ||| |||| || | || ||| | ||||||||| Sbjct 169 CAGCGACTCATCTTCGCGGGAAAGCAGTTGGAAGATGGCCGTACCTTGTCTGACTACAAC 228 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||||||| ||| | || |||||| | ||| || Sbjct 229 ATCCAAAAAGAATCTACCCTGCATCTTGTGTTG 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497468797069440