Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq429159 93.3 5e-14 seq432080 86.0 8e-12 >seq429159 Length=5605 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/204 (72%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 102114 CCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT-TGATACAAAGTCGCGTTC 102172 |||||| | | ||||| || |||||||| | |||||| | || || | ||| || Sbjct 3906 CCATGTGTCAAGAAGAAGGCCGATTGGGCGCTCAAGTGGATCTGTCACGA-GTCTGCATC 3848 Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 || | |||||| || |||| ||||| ||| ||||| || |||||||||||| || Sbjct 3847 TTTCGGCGAGCGAATCATCGCCTTTGCCGCTGTCGAGGGGATTTTCTTCTCTGGTAGTTT 3788 Query 102233 CTGC-GCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||| || |||| ||||| ||||||||||| || |||||||| | ||| ||| | Sbjct 3787 -TGCTGCCATTTTCTGGCTGAAGAAGCGAGGGCTTATGCCAGGCTTGACTTTCAGCAATG 3729 Query 102292 AGCTTATCTCTCGTGACGAGGGAC 102315 | || || || ||||| |||| || Sbjct 3728 AACTGATTTCACGTGATGAGGTAC 3705 >seq432080 Length=12955 Score = 86.0 bits (94), Expect = 8e-12 Identities = 165/241 (68%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| | ||||| || | |||||||||||||||| || |||||| ||| Sbjct 9574 CCGCAGCACATGCTGATGCGTGTGTCAGTCGGTATCCATGGGGAGGACATTGATGCTGCC 9633 Query 111672 TTGGAGACATACGACAAGATGTC-CCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| ||| || | | || | | ||| |||| ||||| |||| || || || Sbjct 9634 ATTGAGACTTACAACCTGCTATCGGAGCGATAT-TTCACGCACGCGTCACCCACGCTGTT 9692 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 || ||| | || || |||| || | ||||| || ||||| | |||| | || || Sbjct 9693 CAGCGCCGCAACGCCGCGACCACAGCTCTCCAGCTGCTTCCTGCTGGCAATGAGCGAAGA 9752 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 ||| | || || |||| |||||| | | || |||| || ||||||| ||| || Sbjct 9753 CAGCATCGAAGGGATCTACGACACTCTGAGGCAGTGCGCCCTCATTTCAAAGTCGGCAGG 9812 Query 111851 T 111851 | Sbjct 9813 T 9813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617386581233520