Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq391541 145 2e-29 seq340006 116 8e-21 seq385119 114 3e-20 seq407459 98.7 2e-15 seq54643 84.2 5e-11 >seq391541 Length=1171 Score = 145 bits (160), Expect = 2e-29 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| | ||| || || ||||| ||||| || ||||| || | ||||||||| ||||| Sbjct 1071 CAAAACCAAGTGCAGGGTCGACTCCTTTTGGATGTTGTAGTCAGAAAGAGTTCTGCCATC 1012 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || || || || || |||||||| || || ||||| || || || || || |||||||| Sbjct 1011 CTCCAGTTGTTTTCCAGCGAAGATCAGACGCTGTTGATCGGGGGGGATTCCCTCTTTGTC 952 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||| || || ||| || ||||| || | ||| ||| ||| || || ||||||| || Sbjct 951 TTGGATCTTGGCCTTAACATTCTCGATCGAGTCAGAAGCTTCGACCTCTAGGGTAATGGT 892 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | ||||| ||||| | |||||| Sbjct 891 CTTACCCGTGAGGGTTTTAACGAAAATTTGCAT 859 >seq340006 Length=671 Score = 116 bits (128), Expect = 8e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || || || || || || ||||| || | | |||| || || || ||||| Sbjct 74 GTGGAGTGTCGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCCTCAAGCTG 133 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| | ||| || || ||||| || || ||||| |||||||| || || Sbjct 134 CTTTCCGGCAAAGATCAATCGCTGCTGATCTGGGGGGATTCCTTCCTTGTCTTGGATCTT 193 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 || ||||||||||| | || ||| ||| || |||||||| | ||||| ||||| Sbjct 194 GGCTTTCACGTTCTCAATCGAATCAGAAGCTTCTACCTCAAGGGTGATTGTCTTCCCTGT 253 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 254 CAATGTCTTCACGAAAATCTGCAT 277 >seq385119 Length=1061 Score = 114 bits (126), Expect = 3e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || |||||||||||||| ||||| || ||||| || || ||||| || |||||||| || Sbjct 3 TTGCCTGCGAAGATAAGACGTTGCTGATCTGGGGGGATTCCTTCCTTATCTTGAATCTTA 62 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| |||||||| | ||| ||| || ||||||||||| | ||||| || ||| Sbjct 63 GCCTTGACATTCTCAATCGAGTCTGAAGCCTCAACTTCAAGGGTGATGGTCTTCCCCGTC 122 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | |||||| Sbjct 123 AATGTCTTCACAAAGATTTGCAT 145 >seq407459 Length=1649 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| |||||||| || || || | |||||||| |||||||| ||||| Sbjct 89 GTGAAGAGTGGACTCCTTTTGAATGTTATAGTCAGAAAGAGTTCGGCCATCTTCCAGCTG 30 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTG 195023 || |||||||||||||| ||||| || Sbjct 29 TTTGCCTGCGAAGATAAGACGTTGCTG 3 >seq54643 Length=225 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 195015 TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||| || |||||||| || || ||||||||||| || || || ||| |||||||| || Sbjct 2 TCGCTGCTGGTCTGGGGGGATACCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCGAT 61 Query 195075 GGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 | ||| ||| || |||||||| |||| ||||| || |||| ||| || || || | Sbjct 62 CGAGTCAGAAGCCTCAACTTCAAGTGTAATGGTCTTGCCGGTCAGAGTCTTCACAAAGAT 121 Query 195135 TTGCAT 195140 ||||| Sbjct 122 CTGCAT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1103333639664597