Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphinemura_20sulcicollis_20[genbank_20GCA_5F001676325.1_202016-06- 24] 432,491 sequences; 271,924,966 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq429159 120 6e-22 seq432080 102 2e-16 seq430308 84.2 4e-11 >seq429159 Length=5605 Score = 120 bits (132), Expect = 6e-22 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | ||| | || || ||||||||||| || || ||| ||||||||||| Sbjct 3746 CCTGGCATAAGCCCTCGCTTCTTCAGCCAGAAAATGGCAGCAAAACTACCAGAGAAGAAA 3805 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAG 48310 || ||||| || || || || ||| ||| | ||| |||||||| || || || || Sbjct 3806 ATCCCCTCGACAGCGGCAAAGGCGATGATTCGCTCGCCGAAAGATGCAGACTCGTGACAG 3865 Query 48311 ATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 ||||| |||||||| || ||||||||||||| |||||||||||||| || || Sbjct 3866 ATCCACTTGAGCGCCCAATCGGCCTTCTTCTTGACACATGGCATCGTCTCCATAGC 3921 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || ||||||||||| || || || | ||| || || |||||| | |||||| Sbjct 4065 GTACATTTCTGAGTGCACATTTTCCATGGCCACCTGAAAGCCATAGAAGCAGCGGGCCTC 4124 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 ||| || || || | ||||||||| | || ||||| ||||| ||||| || || Sbjct 4125 TGTCACTTGGACCTCCTGGCTGAATCTCTCGACAAGGTTCTCGTTGACGATCCCGTCGGA 4184 Query 48544 AGCAGCAAAGAAGGCAAGGACATGT 48568 ||||| ||||||||||| || ||| Sbjct 4185 GGCAGCGAAGAAGGCAAGAACGTGT 4209 >seq432080 Length=12955 Score = 102 bits (112), Expect = 2e-16 Identities = 175/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 213159 CCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCA 213218 |||| |||| ||||| | || | ||||| ||||||||||| ||||| || ||| Sbjct 12604 CCCTCGTAACTTGAGTACGTCCCCTCCTCCTGCGCCAGCTCGCAACTCGCCTCCATTGCA 12545 Query 213219 GCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAG 213278 |||||||| | || ||||| |||| | ||||||| |||| |||||| | | ||| Sbjct 12544 GCGTAGTACAGTGTCTCAAAGATCTGCGTGTTGAGTTTCTGGGCCTCCTCGCTCTCGAAC 12485 Query 213279 GGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTG 213338 ||||| |||| | ||| | || || || ||||||| || || || ||||| | | Sbjct 12484 GGCATGCGCATGAGGATGAAGGCGTCGGCAAGGCCCTGGATGCCAATTCCAATGGGCCGG 12425 Query 213339 TGTCTCAGGTTAGA---CTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATC 213395 |||| ||| || ||||| ||| || ||||| ||||| ||||||||| Sbjct 12424 TGTCGGGTGTTGGAAACCTTGG---CCTCGGGCACTGGGTAGTAGTTGACATCGATGATC 12368 Query 213396 TTGTTGAGGTTGC 213408 ||||| | ||||| Sbjct 12367 TTGTTCAAGTTGC 12355 Score = 96.9 bits (106), Expect = 6e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 213495 GCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGG 213554 ||||||||||| || || ||||| | | ||| |||| |||||||||||||||||| Sbjct 11909 GCCAGGTTGCACACAGCGACCTCTTCGGGTGAAGTGAACTCGATGATCTCGGTGCACAGG 11850 Query 213555 TTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTT 213595 || ||||| ||||| ||||| |||||||| ||||| ||||| Sbjct 11849 TTACTGCAGCGGATTGTGCCGAGGTTCTGCTGGTTGGACTT 11809 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Minus Query 213799 CCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGT 213858 |||||| | | ||| |||| |||||||||||| |||| ||| || || ||| |||| Sbjct 11211 CCCCGTTAGCAGCGACCCTCTCCATGAACAGGTCTGGGATCCAGAGGCCGTAGAAAAGGT 11152 Query 213859 CCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGT 213918 | | || | ||| ||| || | || || || || || || || ||||||| Sbjct 11151 CACGGGCACGGACCTCCTCCTTACCGGTATTCTTCTTGAGGTCGAGGAACTCGAAGATGT 11092 Query 213919 CCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCC---TCTTGCCGCCCTG 213973 | |||||||||||||| | ||| || ||||| |||||||||| | ||||||||||| Sbjct 11091 CGGCGTGCCACGGCTCGAGGTACATAGCAAACGCGCCCGGCCGCTTGTTGCCGCCCTG 11034 >seq430308 Length=6820 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| || || ||||||| |||||| |||||||| | || ||||| |||| || Sbjct 2838 TTCACTTTGTCTTCGAGCCGCGAGATGCGCTCCAGTTTCCTTCGTCGGCACTTGGACGCG 2779 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 |||| ||||||| | ||||| | ||| ||||| || ||| |||||||||| Sbjct 2778 GCCACACGGTTCCTCTGCCTCTTCCTCTCCAATTTGATCTTCTCTTGGCACTCCATGTCG 2719 Query 241619 ATCGGAGAC 241627 ||||| ||| Sbjct 2718 ATCGGCGAC 2710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926496805597440